Solilutibacter oculi: DCD74_00855
Help
Entry
DCD74_00855 CDS
T05527
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lue
Solilutibacter oculi
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lue03019
]
DCD74_00855 (hrpA)
Enzymes [BR:
lue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DCD74_00855 (hrpA)
Messenger RNA biogenesis [BR:
lue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DCD74_00855 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
SRP54
NACHT
T2SSE
Cas3-like_C_2
AAA_23
TsaE
AAA_25
ABC_tran
PhoH
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AXA83431
UniProt:
A0A344J321
LinkDB
All DBs
Position
183189..187223
Genome browser
AA seq
1344 aa
AA seq
DB search
MAMTADPQQAIRQARRAIEGASTRDRGRLLGLLAKWQAKPGDVALRDAFAHKLEASVAAR
ETRAAQLPVATINAELPIAAHADEIVELIRTHQVVVIAGETGSGKTTQLPKLCLQAGRGA
AGMIGCTQPRRIAARWVARRVAEELQVPMGGAVGFQVRFNDQVGDATAIKFMTDGILLAE
IQTDRWLSKYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKLVVTSATIDTMRFAAHF
EGAPVVEVEGRTFPVEHRYRPLEGEGEDDGERTVLDGIVAACDEITRENPLGDTLIFLPG
EREIRDAHLALERRKYRHTEVVPLYARLSAKDQDKVFQPGPQRRIVLATNVAETSLTVPR
IRYVVDPGFARVKRYSPRQKLDRLHIEAISQASANQRAGRCGRVADGVCIRLYSDADFGA
RSEFTDPEIRRSALAGVILRMLSIGLGDIETFPFLEPPDPRAVADGWQQLAELGAVDAHR
KLTAIGRQMARLPVDVKLSRMLIAADKHGVLHEMLAIASFLGIQDPRERPADARAAADNA
HALFADAKSEFIGIWKLWEAFRIAHEDLSQSQLRKWAEKHYLGFLRLREWRELHRQLKLQ
CEELGWATQRVEASSARTDANADKRQRPRKPGQGEAVRVVTRADVQPDAAQAASHVDYAR
LHRALIAGLPTQVAHLGDRGIYEGPRGRRFQLFPGSVLAKKPPPWLLSATLLDTEKVWAI
TNAAIEPDWVIAEVPHLLARRHHDPHWSRSQGRVVGSEQISLFGLVLAPKKPVHYGALYP
EESRAIFVREGLVPGEVNTRSGFLARNLRVLADAREEEAKLRRAGLVVDEDWQAQWYLDR
LPSHIHNAQALDAWWKGLSKDAQAALEWTRDDLLVVDETDAARFPPYLAMGDVRLAVRYR
FEPGAADDGMTLAVPLHLLGALDAARLSWLAPGFVQDKAAALIKSLPKSLRRNFVPAPDF
ARAFAEAHREPEPGDMASSLARFLKRLAGVEVMEADFDEAGIDPHLRMNLQLQDESGQHV
LANSRDLADLRAKFGQRAQRAFAARAAKDLAKAGLTAFPEPPIPSQVMGDGGIPAFPALH
DDGESVSLHVHAQRANAEHHHPEGVRRLLRIALADKLKQARRQLPIPPKTGLLYAAIDHA
PSKVEALRKPVARDADQLREDLVEGAFAALTAEGLGDVRDADAFAQQADVIGKTLFGEAM
RRLQQAEAILAGVAEVRAKLESKLMGWASGNLDDMRAHLAALAAPGFLRETPAQALADLP
RYLKALSLRAERAQRDPQKDQTRMLELKPFADALADADPLHPEARALRWELEELRVATFA
QELGAKGGVSAKKLAARIARLANG
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggctatgacggctgacccgcaacaggcgatacgacaggcacggcgcgccatcgaaggc
gcgtcgacgcgtgaccgtggccgcttactgggcctgctggcgaagtggcaggcgaagccg
ggcgatgtcgcgttgcgcgatgccttcgcccacaagctggaagcctcggtcgccgcgcgc
gaaacccgcgccgcgcaactgcccgtcgccacgatcaacgccgagctgccgattgccgcg
cacgccgacgagatcgtcgaactgatccgcacgcatcaggtcgtggtgatcgccggcgag
accggcagcggcaagaccacgcagttgcccaagctctgcctgcaggccgggcgtggcgcg
gccgggatgatcggctgcacccagccacgccgcatcgccgcgcggtgggtggcgcggcgc
gtggccgaggaactgcaggtgccgatgggcggcgcggttggtttccaggtccgcttcaac
gaccaggtcggcgatgccaccgcgatcaagttcatgaccgacggcatcctgctggccgag
atccagaccgaccgctggctgtcgaagtacgacacgatcatcatcgacgaggcgcacgag
cgcagcctcaacatcgacttcctgctcggctacctcaagcagctgttgccgaagcgcccg
gacctgaagctggtcgtcacctcggccaccatcgacaccatgcgtttcgccgcgcatttc
gaaggcgcgccggtggtggaagtggagggccgcactttcccggtcgagcatcgttaccgc
ccgctggaaggcgaaggagaggacgatggcgaacgcaccgtgctcgacggcatcgtcgcc
gcctgcgacgaaatcacccgcgagaatccgctgggcgacacgctgatcttcctgccgggc
gagcgcgagatccgcgacgcgcacctggcgctggaacggcgcaaataccggcatacggaa
gtcgtgccgctgtacgcgcggctttccgccaaggaccaggacaaggtgttccagcccggc
ccgcagcggcgcatcgtgctggcgaccaatgtggccgagacctcgctgaccgtgccgcgt
atccgctacgtggtcgatcccggcttcgcgcgggtcaagcgctacagcccgcgccagaaa
ctggaccgcctgcacatcgaggcgatctcgcaggccagcgccaaccagcgtgccggtcgc
tgcgggcgcgtcgccgatggcgtctgcatccggctgtattcggatgctgatttcggtgcg
cgcagtgaattcaccgaccccgagatccgccgttccgcgctggccggcgtgattttgcgg
atgttgagcatcgggctgggcgacatcgagaccttcccgttcctggagccgccggacccg
cgcgcggtggccgatggctggcagcagctggccgagctcggtgcggtggatgcccatcgc
aagctgaccgccatcgggcggcagatggcgagactgccggtggacgtgaagctctcgcgc
atgctgattgccgcggataaacacggcgtgctgcacgagatgctggccatcgccagcttc
ctcggcatccaggatccgcgcgaacgcccggccgatgcacgcgccgccgccgataacgca
cacgccctgttcgccgacgcaaaatccgaattcatcggcatctggaaactgtgggaagcc
ttccgcatcgcccacgaagacctgagccagtcgcagctgcgcaaatgggcggagaagcac
tacctcggctttctgcgcctgcgcgaatggcgcgagctgcatcgccagctcaagctgcaa
tgcgaggaactgggctgggcgacgcagcgcgtggaggcgtcatcagcgcgcaccgacgcg
aatgccgacaagcgccagcggccacgcaagccggggcagggtgaagcggtgcgtgtcgtg
acgcgtgcggatgtgcagccggatgccgcgcaggccgcctcgcacgttgactatgcccgc
ctgcatcgcgcgttgatcgccgggctgccgacgcaggtcgcgcacctcggtgatcgcggc
atctacgaaggcccgcgcggtcgccgcttccagctgtttcccggttcggtgctggcgaag
aagccgccgccgtggctgctctccgcgacgctgctggacaccgaaaaagtctgggcgatc
accaatgcggcgatcgaaccggactgggtgatcgccgaagtgccgcacctgctcgcgcgc
cgtcatcacgatccgcactggtcgcgttcgcaggggcgcgtcgtcggcagtgagcagatc
agcctgttcgggctggtgctggcgccgaagaagccggtgcattacggcgcgctgtatccg
gaggaatcgcgtgcgattttcgtgcgcgaagggctggtgccgggcgaggtgaacacccgc
agcggcttcctcgcccgcaacctgcgcgtgctcgccgatgccagggaagaggaagccaag
ctgcgccgcgccggactggtggtcgacgaggactggcaggcgcagtggtatctcgatcgc
ctgccatcgcacatccacaacgcgcaggcgctggatgcgtggtggaagggtttgtcgaag
gacgcgcaggccgcgctcgaatggacgcgcgatgacctgctggtcgtggacgaaacagat
gccgcgcgtttcccgccctatctggcgatgggcgatgtgcgtctggccgtgcgctaccgc
ttcgagcccggtgccgccgatgacggcatgacgctcgccgtgccgctgcacctgctcggc
gcgttggacgcggcgcggctgtcgtggcttgcacccggcttcgtgcaggacaaggcggcg
gcgctgatcaagtcgctgccgaaatcgctgcggcgcaacttcgttccggcgccggatttc
gcccgcgccttcgccgaggcgcatcgcgaaccggagccgggcgacatggcctccagcctc
gcgcgtttcctcaagcgcttggcgggcgtggaagtgatggaggcggatttcgacgaagcc
ggcatcgacccgcatctgcgcatgaacctgcagcttcaggacgagtccggccagcacgtg
ctggcgaattcccgcgatctcgccgacctgcgtgcgaagttcggccagcgtgcgcagcgt
gccttcgccgcgcgggccgcgaaggatctggcgaaggccgggctcaccgcgttccctgaa
ccaccgattccgtcgcaggtgatgggcgatggcggcatcccggcgttccccgcgctgcat
gacgatggcgagtcggtgtcgctgcacgtgcatgcgcagcgcgcgaatgccgaacaccac
cacccagaaggcgtgcgccgtctgctgcgcatcgcgctggccgacaagctcaagcaggca
cgccggcagctgccgatcccgcccaagaccggcctgctgtatgccgccatcgatcacgcg
ccgagcaaggtcgaggcgttgcgcaagccggtcgcgcgcgatgccgatcagctgcgcgag
gatctggtcgaaggcgccttcgccgcgctcaccgccgaagggctgggcgatgtgcgggat
gcggatgcctttgcgcagcaggcggacgtcatcggcaagacgctgttcggcgaagcgatg
cgccggctgcagcaggccgaggcgatcctcgccggtgtcgccgaagtgcgcgccaagctg
gaatcgaaactgatgggctgggccagcggcaatctggacgacatgcgcgcgcatctggcc
gcgctcgccgcgcccggtttcctgcgcgagacgccggcgcaggcgctcgccgatctgccg
cgctacctcaaggcgttgtcgctgcgtgccgaacgtgcgcagcgcgacccgcagaaagac
cagacgcggatgttggagctgaaacccttcgccgacgcgctggccgatgccgacccgctg
catcccgaagcacgcgcgttgcgctgggagctggaagagctgcgcgtggcgaccttcgcg
caggaactcggcgcgaagggcggcgtctcggcaaagaaactggccgcgcgcatcgcgcgg
ctcgcgaacgggtga
DBGET
integrated database retrieval system
