Solilutibacter oculi: DCD74_01505
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Entry
DCD74_01505 CDS
T05527
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lue
Solilutibacter oculi
Pathway
lue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCD74_01505 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lue03021
]
DCD74_01505 (rpoC)
03400 DNA repair and recombination proteins [BR:
lue03400
]
DCD74_01505 (rpoC)
Enzymes [BR:
lue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCD74_01505 (rpoC)
Transcription machinery [BR:
lue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCD74_01505 (rpoC)
DNA repair and recombination proteins [BR:
lue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCD74_01505 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXA83539
UniProt:
A0A344J3C9
LinkDB
All DBs
Position
322344..326603
Genome browser
AA seq
1419 aa
AA seq
DB search
MKDLLNLFNQQRAVPDFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCSA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLAAPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTPLEAGQLLNEEQYMQARQEHGDDFEAAM
GAEAVFDLLRDIDLQAEMVKLKEEIASTGSETKLKRLTKRIKLVEAFLDSGNRPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELAAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LKLHQCGLPKKMALELFKPFIFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKAGEGMAFANVSEVKRAYDNR
VVELHAKVKVRITEYVLNDDGERTAKTSVVDTTVGRALLADILPKGLSYSLVNTELNKKA
ISRLINTCYRELGLKDTVVFADQLMYTGFSYATRAGVSIGIDDMIIPQEKAGILEEAEAE
VLEIQQQYQSGLVTGGERYNKVVDIWSRTNERVAKAMMDTIGTEKVENAKGETIDQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITDTDCGTYNGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVQKLEDAGVQTIQVRSTITCEAPFGVCAHCY
GRDLGRGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNITVKTTGSVK
FNNLKSVSHESGGIVAVSRSGEISVLDDHGRERERYKLPYGAMINVKDLASIKAGQVIAN
WDPHNHPIVSEVAGFVRFYDFIDGVTVIEKTDELTGLASREITDPKRRGSQGKDLRPLVR
IVDKNGKDLTIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAEISGIVSFGKDTKGKQRLIIKGPDGVDHEELIPKYRQVIVFE
GEHVEKGETVVDGEPNPQDILRLKGVEELAAYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEITDGGDSRYLNGEQAERQRVIEDNVKHEGRNELPARFQPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHAQRRRNAAGLTAAD
MAVLSAETPQAAEPAELPVEMVMIEADGADTAGNETGAE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgctcaacctgttcaaccagcagcgcgccgtgccggacttcgacgcgatc
aagatcgcgctcgcctcgccggacatgatccgctcctggtccttcggcgaagtcaagaag
ccggaaaccatcaactaccgcaccttcaagccggaacgtgacggcctgttctgctcggcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggccgcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgacgctgcgtgacatcgagcgcatcctgtac
ttcgaagcctacgtcgtcaccgagccgggcctgaccccgctcgaagcaggccagctgctc
aacgaagagcagtacatgcaggctcgccaggaacacggcgacgacttcgaggccgcgatg
ggcgccgaggccgtgttcgacctgctgcgcgacatcgacctgcaggccgagatggtcaag
ctgaaggaggagatcgcctccaccggttccgagaccaagctcaagcgcctcaccaagcgc
atcaagctggtcgaggccttcctcgactccggcaaccgcccggagtggatgatcatgacc
gtgctgccggtgctgccgccggacctgcgcccactggtcccgctggatggcggccgcttc
gcgacctccgatctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgcttgagctggccgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatcggtcgatgcgctgatggacaacggccgccgtggccgcgccatcaccggcaccaac
aagcgcgccctcaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgcttgaactgttcaagcccttc
atcttcgccaagctgcagcgccgtggcctggccacgacgatcaaggccgcgaagaagctg
gtggagcgcgaagaggcggaagtctgggacatcctggaagaagtgatccgcgaacacccg
gtgatgctgaaccgtgcgccgaccctgcaccgcctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggcctgtactacatgacccgcgcgctggagaacaag
gcgggcgagggcatggccttcgccaacgtatccgaagtgaagcgcgcctacgacaaccgc
gtggtcgagttgcacgccaaggtcaaggtgcgcatcaccgagtacgtgctgaacgacgac
ggcgagcgcaccgccaagacctcggtggtcgataccaccgtgggccgcgcgctgctggcc
gacatcctgccgaagggtctgtcgtactccttggtcaacaccgagttgaacaagaaggcg
atcagccgcctcattaacacctgctaccgcgagctgggcctgaaggacacggtcgtgttc
gccgaccagctgatgtacaccggcttctcctacgccacccgtgcgggcgtgtcgatcggc
atcgacgacatgatcatcccgcaggaaaaggccggcatcctcgaggaagccgaagctgag
gtgctggagatccagcagcagtaccagagcggtcttgtgaccggcggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcgtggccaaggcgatgatggacacc
atcggcaccgagaaggtcgagaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgatctacatcatggccgactcgggcgcgcgtggttcgcaggcgcagatccgccagctg
gccggcatgcgcggcctgatggccaagccggacggctcgatcatcgagaccccgatcacc
gcgaacttccgcgaaggcctgaacgtcctccagtacttcatctcgacccacggcgcccgt
aagggcctcgcggataccgcgctgaagacggcgaactcgggttacctgacccgccgcctg
gtggacgtggcgcaggacgtggtcatcaccgacaccgactgcggcacctacaacggcctc
accatgaccccgatcgtcgaaggcggcgatgtggtcgagccgctgcgcgaccgcgtgctg
ggccgcgtggtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtgcagaagctcgaggacgccggcgtgcagacc
atccaggtccgctcgacgatcacctgtgaggcgccgttcggcgtgtgcgcgcactgctac
ggccgtgacctcggccgcggccacctggtcaacatgggcgaggcggtcggcgtggtcgcc
gcgcagtccatcggtgagccgggtacccagctgacgatgcgtaccttccacatcggtggt
gccgcgtcgcgtgccgccgccatcgacaacatcacggtcaagaccaccggctcggtgaag
ttcaacaacctgaagtcggtctcgcacgagagcggcggcatcgtcgcggtctcgcgttcg
ggcgaaatctcggtgctggacgaccatggccgcgagcgcgagcgctacaagctgccctac
ggcgcgatgatcaacgtcaaggacctggcctcgatcaaggccggccaggtcatcgccaac
tgggatccgcataaccacccgatcgtctcggaagtggcgggcttcgtgcgcttctacgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggcctcgcctcgcgc
gagatcaccgatccgaagcgtcgcggctcgcagggcaaggacctgcgcccgctggtgcgc
atcgtcgacaagaacggcaaggacctcaccatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctccatcgtcaacctgcaggacggcgctgccgtcggcgtgggtgac
gtggtcgccaagattccgcaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaagcccgcaagccgaaggacccggcgatcctcgccgagatc
tccggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaagggg
ccggatggcgtcgatcacgaagagttgatcccgaagtaccgccaggtcatcgtgttcgaa
ggcgagcacgtcgagaagggcgagaccgtggtggacggcgagccgaacccgcaggacatc
ctgcgcctgaagggtgtcgaggaactggccgcttacctgaccaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatg
ctgcgcaaggtcgagatcaccgacggcggcgattcccgctacctcaacggcgagcaggcc
gagcgccagcgcgtcatcgaggacaacgtcaagcatgaaggccgcaacgaactgccggcg
cgcttccagccggtgctgctgggcatcaccaaggcgtcgctggcgaccgagtcgttcatc
tccgcggcctccttccaggagaccacccgcgtgctgaccgaagcggccgtccgcggcacc
cgtgacagcctgcgtggcctgaaggaaaacgtgatcgtcggccgcctgatcccggccggt
accggcctggcctaccacgcgcagcgccgccgcaatgccgccggcctgaccgccgccgac
atggccgtgctgtccgcggaaaccccgcaggccgccgagccggcggaactgccggtggaa
atggtaatgatcgaagccgacggtgccgacaccgccggcaacgagaccggggcggagtga
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