Solilutibacter oculi: DCD74_02575
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Entry
DCD74_02575 CDS
T05527
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lue
Solilutibacter oculi
Pathway
lue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCD74_02575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lue03400
]
DCD74_02575
Enzymes [BR:
lue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCD74_02575
DNA repair and recombination proteins [BR:
lue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DCD74_02575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXA85422
UniProt:
A0A344J8R2
LinkDB
All DBs
Position
complement(540823..544296)
Genome browser
AA seq
1157 aa
AA seq
DB search
MPTPDFRPFLPRAGHARAWWRAPGTRSGLAWAILQAARAHDGPLLVVAADSPQAHQLESD
LRTLLGATPALPLLPFPDWETLPYDSFSPHPDIVSQRLATLHALPAQRRGIVIVPVQTLL
QRLAPVSHVVGGSFDYRTGARLDFDAEKRRLESAGYRNLPQVLDPGDFAVRGGLLDVYPM
GTDTPYRIELFDEEIDSIRAFDPESQRSGERVDAVRLLPGREVPMDEASRERAMAALRDD
AGIDTRRSALYQDLKNGHAPAGIEAWLPLFFAPDRNGQRTATLFDYLPERALPLLCEGVN
EAADKFWLQTGERYEQRRHDPERPLLPPDALYLTPVALRERLNEGQRVEVCGSGHPRHGD
ASMLGVQAVPNLPLAEHHAEPASALKSFLRSFGGQVVIAAESAGRREALLEVLSAAALKP
QVAPALDDAADTFAITVAPLDDGFATDVPLRAILTERQLFPERAAQPRRRKRAGREPEAI
IRDLGELTEGAPIVHEDHGVGRYRGLITLEAGGEKGEYLDIEYAKGDRLYVPVAQLQLVS
RYSGASPETAPLHSLGGEQWTKAKKKAAEKVRDVAAELLEIQAKRRARAGIAIDVDRAMY
EPFAASFPFEETPDQHAAIEAVIRDLSSSQPMDRVVCGDVGFGKTEVAVRAAFVTATAGK
QVAVLVPTTLLAEQHYRTLRDRFADWPLKVEVLSRFKSKKDTLAALEKVERGEIDVIVGT
HKLLQPDVRFKDLGLVIVDEEQRFGVRHKEALKALRANVHLLTLTATPIPRTLNMAMAGL
RDLSIIATPPANRLAVQTFVTPWDGALLREAFQRELSRGGQLYFLHNDLESIVRMKRELE
EMVPEARIGIAHGQMPERELEQVMLDFHRQRYNVLLASTIIESGIDIPNANTIIINRADK
FGLAQLHQLRGRVGRSHHRAYAYLVIPDRRSITEDARKRLDAISSMDELGAGFTLATHDL
EIRGAGELLGEEQSGQMTEVGFSLYTELLERAVKSIRQGKLPDADGQSQRGAEVELHAPA
LIPDDYLPDVHTRLTLYKRISAARDVDALRELQVEMIDRFGLLPDATKNLFAIAELKQEA
TALGIRKLEIGEKNGRLQFVAQPDIDPMAIIRMIQSQPKRYQMDGGDKLRLNNLDLPDVA
SRMQLARGVFALLKISS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttgcccacccccgatttccgccccttcctgccccgcgccggccatgcccgcgcctggtgg
cgtgcgcccggcacccgttccggcctggcctgggccatcctgcaagcggcccgcgcgcat
gacggcccgctgctggtggtcgcggccgacagcccgcaggcgcaccagctggaatccgac
ctccgcaccctgctcggcgccacgcccgcgctgccgctgctgcccttcccggactgggaa
accctgccctacgacagtttcagcccgcatccggacatcgtctcgcagcggctggccacg
ctccacgccctgcccgcgcaacgccgcggcatcgtcatcgtgccggtgcagaccctgctg
cagcggctggcgccggtctcgcacgtggtcggtggcagcttcgactaccgcaccggcgca
cggctggatttcgatgccgagaagcggcggctggagtccgccggctaccgcaacttgccg
caggtgctcgaccccggcgatttcgcggtgcgcggcgggctgctcgacgtctatccgatg
ggcaccgacacgccttaccgcatcgaactgttcgatgaggaaatcgactcgatccgcgcc
ttcgatccggaaagccagcgctccggcgaacgcgtcgatgccgtccgcctgctgcccggc
cgcgaagtgccgatggacgaggcctcgcgcgaacgggcgatggccgcgctgcgcgacgac
gccggcatcgacacccgccgctccgccctctaccaggacctgaagaacggccacgcgccg
gccggcatcgaagcctggctgccgctgttcttcgcgcccgaccgcaacggccagcgcacc
gcgaccctgttcgactacctgcccgagcgcgccctgccgctgctctgcgaaggcgtcaac
gaggccgccgacaagttctggctgcagaccggcgagcgctacgagcagcgccgccacgat
cccgaacgcccgctgctgccgcccgatgcgctctacctgacgccggtcgcgctgcgcgaa
cgcctcaacgaaggccagcgtgtcgaagtctgcggcagcggccacccgcgacatggcgat
gcgtcgatgctcggcgtgcaggcggtgcccaacctgccgctggccgagcaccacgcggaa
ccggcttccgcgctgaagtcgttcctgcgcagcttcgggggccaggtggtcatcgccgcc
gaatccgccggccgccgcgaggcgctgctggaagtgctctccgccgccgcactcaagccg
caggtggcgcccgcgctggatgacgccgccgacaccttcgccatcaccgtcgccccgctc
gatgacggcttcgccaccgatgtgccgctgcgcgccatcctcaccgaacgccagctcttc
cccgaacgcgccgcgcagccacgccgccgcaagcgcgccggccgcgagccggaagcgatc
atccgcgacctcggtgaactcaccgaaggcgcgccgatcgtccacgaggatcacggcgtc
ggtcgctaccgcggcctgatcacgctcgaagccggcggcgagaagggcgagtacctcgac
atcgaatacgccaagggcgaccgcctgtacgtgccggtcgcgcagctgcaactggtgtcg
cgctactccggcgcgtcgcccgagaccgcgccgctgcattcgctcggcggcgagcaatgg
accaaggcgaagaagaaggccgccgagaaggtccgcgatgtcgccgccgaactgctggaa
atccaggccaagcgacgcgcccgcgccggcatcgccatcgatgtcgaccgcgcgatgtac
gagcccttcgccgccagcttcccgttcgaggaaacgccggaccagcacgcggcgatcgaa
gccgtcatccgcgacctgtcgtcatcgcaaccgatggaccgcgtggtctgcggcgatgtc
ggcttcggcaagaccgaggtcgccgtgcgcgccgccttcgtcaccgccaccgccggcaag
caggtcgccgtgctggtgccgaccacgttgctcgccgagcagcattaccgcacgcttcgc
gaccgcttcgccgactggccattgaaggtggaagtgctgtcgcgcttcaagtcgaagaag
gacacgctcgcggcattggagaaagtcgagcgcggcgagatcgacgtcatcgtcggtacc
cacaagctgctgcagcccgacgtgcgcttcaaggacctcggcctggtcatcgtcgacgag
gaacaacgcttcggcgtgcgccacaaggaagcgctgaaagcgctgcgcgccaacgtgcac
ctgctcacgctcaccgccacgccgatcccgcgcaccttgaacatggcgatggccggcctg
cgcgatctctcgatcatcgccacgccgccggccaaccgcctcgcggtgcagaccttcgtc
accccgtgggatggcgccttgctgcgcgaagccttccagcgcgaactctcgcgcggcggc
cagctctacttcctgcacaacgaccttgaaagcatcgtgcggatgaagcgcgagctggaa
gagatggtgcccgaggcacgcatcggcatcgcccacggccagatgcccgagcgcgagctg
gaacaggtgatgctcgacttccaccgccagcgctacaacgtgctgctggcatcgaccatc
atcgaatccggcatcgacatccccaacgccaacaccatcatcatcaaccgcgctgacaaa
ttcggcctggcccagctgcaccagctgcgcggacgcgtcggccgctcgcaccatcgcgcc
tacgcctacctcgtcatccccgaccgccgctcgatcaccgaggatgcgcggaagcggctg
gacgcaatcagttcgatggacgaactcggcgccggcttcaccctcgccacccatgatctg
gagatccgcggtgccggcgaactgctcggcgaggaacagagcgggcagatgaccgaagtc
ggtttctcgctctataccgagctgctggaacgcgcggtcaagtcgatcaggcagggcaag
ctgcccgatgccgatggccagtcgcagcgtggtgccgaagtcgagctgcacgcgccggcg
ctgatccccgacgattacctgcccgacgtccacacgcggctcacgctttacaagcgcatc
agcgccgcccgcgacgtcgatgccctgcgcgaactgcaggtggagatgatcgaccgcttc
ggcctgctgcccgacgcgacgaagaacctgttcgccatcgccgaactcaagcaggaagcg
accgcgctcggcatccgcaagctggaaatcggcgagaagaacggccggctgcagttcgtc
gcccaacccgacatcgacccgatggcgatcatccgtatgatccagagccagcccaagcgc
taccagatggatggcggcgacaagttgcggctcaacaacctggatctgccggatgtcgct
tcgcgcatgcaactcgcgcgtggcgtgttcgcgctgctgaagatttcgtcctga
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