Solilutibacter oculi: DCD74_04485
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Entry
DCD74_04485 CDS
T05527
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lue
Solilutibacter oculi
Pathway
lue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCD74_04485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lue03019
]
DCD74_04485
03009 Ribosome biogenesis [BR:
lue03009
]
DCD74_04485
Enzymes [BR:
lue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DCD74_04485
Messenger RNA biogenesis [BR:
lue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DCD74_04485
Ribosome biogenesis [BR:
lue03009
]
Prokaryotic type
rRNA processing factors
DCD74_04485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AXA85456
UniProt:
A0A344J8U6
LinkDB
All DBs
Position
937645..940788
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AA seq
1047 aa
AA seq
DB search
MLINATQAEELRVAIVDGQNLYDIDIEQPSKENKKSNIYKGKITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQSGVDHNKANIKELLREGQEVVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPTAGGVSRRIEGEDRAELKRAMDALAIPDDMGVIIRTAGVGRDAEELQWDL
DYLLSVWKAIAEAALSKPAPFLIYQESRLIIRALRDYMRADIGEILVDTPEMYEEAKEFV
AQVMPHNLRKLKHYTDDTPLFNRFQIESQIESIYEREVRLPSGGALVIDQTEALTAIDVN
SARATRGGDIEETAFNTNVEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENKLQN
ALKYDRARVQIGRISRFGLMEMSRQRLRPSLGENSQIVCPRCEGHGRMRGVESLSLSILR
VAEEHAMKDNTGQVLVQAPVEIANYLLNEKRRALAEIEQRHDAPVVIVADEQLQTPHYEV
TRIRENELGEETSRPSYQRGTPRKLPTHALTKAHLNIPDAPAVRNVKPAQPAPIRAPREE
APAPAPAPVAPAPQFTQQAARPKAGFLSRVMQFFTGDAGEAAPAPARDERNESRGGRPQD
RRNGRDGRDGQNRQGQGRNESRNDRGGKPQGNKPQQPKDGRDAQPKPQGEGRQRRERGAQ
PQAGANPAQAPKDAIVQNANPPVNEANAAKPVTEGNKEPRGRGRNRRGGRGSEAGDAAAV
AGTVADEALVVDTPVIASPDAAQVAVDAVESAQRVTADEAQVSDESTDANGDAGDANGEG
ARRRRGRRGGRRRRRGAGGEGAAEGQDALDTLGGDDDAPLFAAQSDQPEFDFDGPGPVVT
PAVRAEEAAAVADAPAVEPVAASNIEPTPSPAEVAVDVVEKSMAEVAAPVEPAVEAPSAP
APTMQGSGLTSMAARGGSGNPRAALPLSAAIAVSLAETAYRPVAAKPQASSDTAQAPAIE
AQPSQVEAVAEPGLAVASDAPAPGIATPAIQEAAPGMSIADAQGPDGDAAATMAPQQADT
LAQAAEAVSVEAEAETEAKREARDGLA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgacgcaggcggaagaactccgcgtcgcaatcgtcgatggacagaac
ctctacgacatcgacatcgagcaaccctcgaaagaaaacaagaaatccaacatctacaag
ggcaagatcacccgtcttgaaccctcgctcgaagccgccttcgtcgactacggcgccgag
cgccacggcttccttccgctgaaggaaatctcccgcgactacttccagtcaggcgttgac
cacaacaaggccaacatcaaggaactcctgcgcgaaggccaggaagtcgtggtgcaggtg
gacaaggaggagcgcggcaacaagggcgccgccctgaccacgttcatctcgctggccggc
cgctacatggtgctgatgccgaactccccgaccgccggcggtgtctcccgccgcatcgag
ggcgaggaccgcgccgaactcaagcgcgcgatggacgcgctggcgatccccgacgacatg
ggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaggaactgcagtgggacctg
gactacctgctgagcgtgtggaaggcgatcgccgaagccgcgctgtccaagcccgccccc
ttcctgatctaccaggagtcgcgcctgatcatccgcgcgctgcgtgactacatgcgcgcc
gacatcggcgagatcctggtcgacacgccggagatgtacgaggaggcgaaggaattcgtc
gcccaagtgatgccgcacaacctgcgcaagctcaagcactacacggacgacaccccgctc
ttcaaccgcttccagatcgagtcgcagatcgagtcgatctatgagcgcgaggtccgcctg
ccctccggcggcgcgctggtcatcgaccagaccgaagcgctgaccgccatcgacgtcaac
tccgcgcgcgccacccgcggcggcgacatcgaggaaaccgccttcaacaccaacgtcgag
gcggcggaggaagtcgcccgccagctgcgcctgcgcgacctgggcggcttggtggtgatc
gacttcatcgacatgtcgtcgaacaagcaccagcgcgaagtcgagaacaagctgcagaac
gcgctcaaatacgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggcctgatg
gagatgtcgcgccagcgcctgcgtccgtcgctgggcgagaacagccagatcgtctgcccg
cgctgcgaaggccatggccgcatgcggggcgtggaatcgctgtcgctgtccatcctgcgc
gtggccgaagagcacgcgatgaaggacaacaccggccaggtgctggtgcaggcgccggtg
gagatcgccaactacctgctgaacgagaagcgccgcgcgctggccgagatcgaacagcgc
cacgacgcgccggtggtgatcgtcgccgacgagcagctgcagacgccgcattacgaagtc
acccgcatccgcgagaacgaactgggcgaagagacctcgcgccccagctaccagcgcggc
accccgcgcaagctgccgacgcatgcgctgaccaaagcccacctcaacatcccggatgcg
ccggcggtccgcaacgtcaagccggcccagcccgcgccgatccgtgccccgcgcgaggaa
gcgccggcgcccgccccggcaccggtcgcgcccgccccgcagttcacccagcaggcggcg
cgcccgaaggccggtttcctgtcgcgcgtcatgcagttcttcaccggtgatgccggcgaa
gccgcgcccgccccggcacgcgatgagcgcaacgaatcgcgcggtggccgcccgcaggac
cgccgcaacgggcgtgatggccgcgacggccagaaccgccagggccagggtcgcaacgaa
tcgcgcaacgaccgtggcggcaagccgcagggcaacaagccgcagcagccgaaggacggt
cgcgatgcgcagcccaagccgcagggcgaaggccgccagcgtcgcgagcgcggcgctcag
ccgcaggccggtgccaatccggcgcaggccccgaaggacgccatcgtccagaacgccaat
ccgccggtcaacgaggcgaatgccgccaagccggtgaccgaaggcaacaaggaaccgcgc
ggccgtggtcgcaaccgtcgtggcggtcgcggcagcgaggcaggcgatgcagccgccgtg
gccggcaccgtggccgatgaagccttggtggtcgataccccggtcatcgcgtcacccgat
gcggcgcaggtcgcggtggatgcggtggaatccgcacagcgcgtgacggcggacgaggca
caggtcagcgacgaatcgaccgacgccaacggcgatgcgggcgatgccaatggcgaaggc
gcgcgtcgtcgtcgtggccgtcgtggtggccgtcgccgtcgtcgtggcgcgggtggcgaa
ggtgccgccgaaggccaggatgcgctcgacacgctgggcggcgatgacgatgccccgcta
ttcgccgcgcagagcgaccagccggagttcgacttcgacggcccgggcccggtggtgacg
ccggccgtgcgcgcggaggaagctgccgccgtggccgatgcaccggctgttgaaccggtc
gctgcctcgaacatcgagcccacgccctccccggccgaagtcgccgtcgatgtcgtcgag
aagtcgatggccgaagtggccgcgcctgtcgaaccggcggtcgaggcgccgtctgcacca
gccccgacgatgcagggcagcggcctgacctcgatggctgcgcgtggcggttccggcaat
ccgcgtgcggccctgccgctgtcggcggccatcgcagtctcgctggcggaaaccgcctat
cgcccggtggcagccaagccgcaggcgtccagcgatacggcgcaggccccggccatcgaa
gcgcagccgtcgcaggtggaagccgtggccgaacccggcctggccgtggccagcgacgca
ccggcgcccggcatcgccacgcccgccattcaagaagccgcgcccggcatgagcatcgcc
gatgcgcagggtccggatggcgatgcggcggccacgatggcaccgcagcaggccgatacc
ctggcccaggcggcggaagcagtcagcgtggaagccgaggcggagacggaagccaagcgc
gaagcgcgcgacggcctcgcctga
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