Solilutibacter oculi: DCD74_06550
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Entry
DCD74_06550 CDS
T05527
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lue
Solilutibacter oculi
Pathway
lue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCD74_06550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lue03019
]
DCD74_06550
Enzymes [BR:
lue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCD74_06550
Messenger RNA biogenesis [BR:
lue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCD74_06550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AXA84397
UniProt:
A0A344J5T7
LinkDB
All DBs
Position
complement(1350516..1351868)
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AA seq
450 aa
AA seq
DB search
MTFETLGLSPALLRALADAGYATPTPIQQQAIPHVLSGHDLLGGAQTGTGKTAAFGLPML
QRLSKETPPKGPRKPRALVLVPTRELAVQVADNLKTYARHLRLNVTTLFGGVGMQPQVDN
LRRGVDVLVACPGRLLDHMEQGNAKLDNVEVLVLDEADRMLDMGFLPSMKRILARVPKER
QTLLFSATFEPRIKALAMEYLKSPVEVQVAAQNTIADTIVHRVHPVDAKKKRDLLVDILS
ERHTDRVLIFGKTKHGCNRLAEQLEESGLPALAIHGNKSQAARQKALDAFKSGKTRILVA
TDVAARGLDIPALPLVINHDLPMVAEDYVHRIGRTGRNGMEGEALSLVSHEEGPLLRQIQ
RLLKADITVESRKGYELDRPLRLDGPMPTNGGNRGRGKPAGHGAPRKPGGAKPAHRAHGK
PQQAQGAKSHAGAKPAGGRGRGPRRPAASA
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgaaaccctcgggctttcgcccgcgttgctgcgtgcgctcgccgatgccggc
tatgccacgcccaccccgatccagcagcaggcgatcccgcacgtgctgtccggccatgac
ctgctgggcggcgcccagaccggcaccggcaagaccgccgcgttcggcctgcccatgctg
cagcgcctgtccaaggaaacgccgcccaagggcccgcgcaagccgcgcgcgctggtgctg
gtgccgacccgcgaactcgccgtgcaagtcgccgacaacctgaagacctacgcgcgtcat
ttgcgcctgaacgtgaccacgctgttcggcggcgtcggcatgcagccgcaggtggacaac
ctgcggcgcggcgtggacgtgctggtggcctgtccgggccgcctgctcgaccacatggag
cagggcaacgccaagctcgacaacgtcgaagtgctggtgctggacgaagccgaccgcatg
ctcgacatgggcttcctgccctcgatgaagcgcatccttgcccgcgtgccgaaggagcgc
cagaccctgctgttctcggccaccttcgagccgcgcatcaaggcgctggcgatggaatac
ctgaagtcgccggtggaagtgcaggtggccgcgcagaacaccatcgccgacaccatcgtg
caccgcgtgcacccggtggatgcgaagaagaagcgtgacctgctggtcgacatcctgtcc
gagcgccacaccgaccgcgtgctgatcttcggcaagaccaagcacggctgcaatcgcctg
gccgaacagctggaagagtctggcctgccagcgctcgcgatccacggcaacaagagccag
gcggcgcgccagaaggcgctggatgcgttcaagtccggcaagacgcgcatcctggtcgcc
accgacgtcgccgcgcgcggcctcgacatcccggcgctgccgctggtgatcaatcacgac
ctgccgatggtcgccgaggactacgtgcaccgcatcggccgcactggtcgcaacggcatg
gaaggcgaggcgctgtcgctggtctcgcacgaggaaggcccgctgctgcggcagatccag
cgcctgctgaaggccgacatcaccgttgaatcgcgcaagggctacgagctggaccgcccg
ctgcgcctcgatggcccgatgccgacgaacggcggtaatcgcggtcgcggcaagcccgcc
gggcatggcgctccgcgcaagccgggtggtgccaagccggcgcatcgcgcgcacggcaag
ccgcagcaggcccagggcgcgaagtcgcatgccggtgccaagccggcgggtggtcgcggt
cgcggcccgcgcaggccggccgcttcggcctga
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