KEGG   Solilutibacter oculi: DCD74_06920
Entry
DCD74_06920       CDS       T05527                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lue  Solilutibacter oculi
Pathway
lue03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lue00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DCD74_06920 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lue03400]
    DCD74_06920 (ligD)
Enzymes [BR:lue01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DCD74_06920 (ligD)
DNA repair and recombination proteins [BR:lue03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DCD74_06920 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AXA84455
UniProt: A0A344J5Z5
LinkDB
Position
complement(1434900..1437482)
AA seq 860 aa
MSLTDYRRKRSFDKTREPEPGKAVPKGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPSVKRMAVEVEDHPIDYATFQGEIPKGEYGGGHVAQFDHGVWATDGDPEEQLVK
GHLRFELFGTKLKGGWHLVRSGKPAKQPQWLLFKDKDDYAGTLEADDLLADVAEAPAVDL
KRAGSGKTNKKKLTAVPAKKGRKKDWAKKASALPKAKKGAAPAGPFEPQLAKLGESPPEG
EQWIHELKWDGYRILATIAKGEVRLWSRNALEWTAKIPEIRDAVAALGLESGALDGELIA
GRGTKQDFNLLQSTLSGERQGKLAYVLFDVLHLNGVDLSGAPLLERKALLQELLDDAPAH
LAFSSHIEGDGEAAFKLAGDRHFEGIISKRADRPYHGGRSEDWRKTKQLVSDEFAVVGYT
APKGSRTGFGSLLLAKPDAEHGWRYVGRVGTGFNDELMREVTKKLAKRGGKKPTAFVGTT
DTDLRTATWFAPRFVVEVFFRGIGRQDLLRQPSLKAIRPDKDVADLADSDRAEKPAKAPS
LAKAAKVSKATKSTKAGKTAAKAGKKGATTADLPKLSSPTKILFPDSRITKQDVWDYYLA
VADHLLPEIAGRPLSIIRCPAGIERPCFFQKHLTAGLERVDTVKLKEESGANADYLVVED
LPGLMELVQFNALEFHPWGSHAQDPDRADRVVFDLDPGEGVPFSEIRKAATDIRKLLEQL
ELESFLRVSGGKGLHVVVPLNPGCEWDLTKRFAHAFADALARSEPDRFLSTATKSKRNKR
IFVDYLRNGRGATAVASYSMRGRAGAPVALPLAWSELSKLDKANAFSIKDVPARLKRRRK
DPWEDIGRIKQNLARWAHNE
NT seq 2583 nt   +upstreamnt  +downstreamnt
atgagcctgaccgactaccgtcgcaagcgaagcttcgacaagacgcgcgaaccggagccg
ggcaaggcggtcccgaagggacaacgggcgatcttcgtggtccagctccaccacgccagc
cgccggcattacgatttccgtttgcaggtgggcgacgccctaaagagctgggcggttccg
aaaggacccagctacgaccccagcgtgaagcgcatggcggtggaggttgaagaccacccc
atcgattacgccacctttcaaggcgaaatccccaagggggaatacggcggcgggcacgtt
gcccagtttgatcacggcgtgtgggccaccgacggcgatcccgaagagcaactcgttaaa
ggccacctgcgctttgaactgttcggcaccaagctcaagggcggctggcatctggtgcgc
tcaggcaaacccgccaagcaaccacagtggctgctgttcaaagacaaggacgactacgcc
ggcacgctggaggccgacgatctgctcgccgacgtggcagaggcgccggccgtggatctc
aagcgcgcgggctccggcaagacgaacaagaagaagctaacggcggtcccggcaaaaaag
ggacgcaagaaggattgggcgaagaaagcctccgctttgcccaaggccaaaaagggcgcc
gcccccgcagggccgttcgagccccaactggccaaactgggcgagtccccgcccgaaggc
gagcagtggatccacgagctcaagtgggacggctaccgcatcctggccaccatcgccaag
ggcgaagtgaggttgtggtctcgcaacgcgctggaatggaccgcgaagattcccgagatc
cgcgacgcggttgcagcgctgggcctcgagtccggggcgctggacggtgagctcatcgcc
ggcagaggcaccaagcaggacttcaacctgctccagtccacactgtcaggcgaacgccag
ggcaagctggcctatgtgctgttcgacgtgctccacctcaacggggtggacctctcgggc
gcaccgctcctcgagcgcaaagcgttgctccaggaacttctagacgacgcaccggcccac
ttggcgttcagttctcacattgagggcgacggggaggcagctttcaagctcgcgggggat
cgccacttcgaaggcatcatctccaaacgcgccgaccgtccttaccacggtggtcggagc
gaggattggcgcaagaccaagcagctggtcagtgatgaattcgcggtggtgggctacacc
gctccgaagggcagccgaaccgggttcggatcactgctgttggccaagccggatgccgag
cacggctggcgctacgtgggccgtgtgggaaccggtttcaacgacgaactgatgcgcgag
gtcactaagaagctggccaagcgtgggggcaagaagcccaccgcgttcgtgggaaccacc
gacaccgacttgcgcaccgccacctggtttgccccgcgctttgtggtcgaggtgtttttt
cgcggcatcggccggcaggacctgttacgccagccctcgctcaaggccattcgccccgac
aaggacgtggcggatctggccgacagcgaccgggcagaaaagcccgccaaggcaccgagc
ctggctaaagccgccaaggtcagtaaggcgaccaagtccaccaaggccggcaagacagca
gcgaaagctggcaagaagggcgccacaacggcggatctgcccaagctctccagtcccacg
aagatcctgttccccgacagtcgtatcacgaagcaagacgtgtgggactactacttggcg
gtggccgaccacttgttgccggagattgctgggcggccgctgtccatcatccggtgcccg
gcgggcatcgagcggccgtgcttcttccagaagcacctgaccgcggggctggagcgggtg
gacaccgtcaagctcaaggaggaatccggcgctaacgcggattacctggtggtggaagac
ctgccggggttgatggagctggtgcagttcaacgcgctggagtttcacccgtggggctcg
cacgcccaagatcccgatcgcgcagaccgggtggtgttcgacctggatcccggtgagggc
gtgccgttctcggagatcaggaaggcggcgacggacatccgcaagctgctggaacagctg
gaactggaatcgttcctgcgcgtgtctggcggcaagggcctccacgtggtggtgcccttg
aatccggggtgcgagtgggatcttaccaagcgcttcgcgcacgctttcgccgacgcgctg
gcccgttcggagccggaccgcttcctatccaccgcaaccaagagcaaacgcaacaagcgg
atctttgtggactacctgcgcaacgggcggggcgccaccgcggtggcctcctactctatg
cgggggcgcgccggtgcgcccgtcgccctgccgctggcctggagcgagctatctaagcta
gataaggcgaatgcgttctcgatcaaggacgtgcccgccagactgaagcgcaggcggaaa
gacccatgggaagacatcggaagaatcaaacagaacctcgcacgttgggcgcataacgaa
tag

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