Luteimonas granuli: FPZ22_01395
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Entry
FPZ22_01395 CDS
T06154
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lug
Luteimonas granuli
Pathway
lug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ22_01395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lug03019
]
FPZ22_01395
03009 Ribosome biogenesis [BR:
lug03009
]
FPZ22_01395
Enzymes [BR:
lug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FPZ22_01395
Messenger RNA biogenesis [BR:
lug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPZ22_01395
Ribosome biogenesis [BR:
lug03009
]
Prokaryotic type
rRNA processing factors
FPZ22_01395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PT
Motif
Other DBs
NCBI-ProteinID:
QDW65717
UniProt:
A0A518N1C0
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All DBs
Position
305235..308498
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRIIRIEPSLEAAFIEY
GADRHGFLPLKEISRDYFAAGVDHNKAGIKELLREGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAELKKAMDSLTIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLSVWKAVAEAALSKPAPFLIYQESRLIIRALRDYMRADIGEILVDTPEMYAEAR
EFVEQVMPHNLRKLKHYTDDVPLFNRFQIESQIENAYERTIRLPSGGALVIDQTEALTAV
DVNSARATKGGDIEETAFHTNLEAADEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENR
LQSALRYDRARVQLGRISRFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSVESLALA
IIRLAEEHAMKDNTGQVLVQAPVEIANYLLNEKRSALGEIETRHKAPIVIVADEQLHTPH
YEVTRLRANELDEEASKPSYRRGTPRKVATIALTKANLNVPAAAVTKVQHARPAPVREPR
PEAAPAPAPAPAPVLAPVAAPASGGIVGWLKALFVGQPAVEAVKPGDAKTDGRRRDERGQ
RQERDGRGSRNGGREGGRRDGRRGGGGEQQVQAGGRQKTTGQQGQAAQSQGTQGSQDSPG
ATQKPPREKPQREKRGERTAGERGGQGQERQRRGEQPQAPSDSRAGKQPEVAADAAAAAV
AAAATATTAVTKDASPIPTQSTDPAVTGEVSRPASGPATSATEAADSGADALQAGAASGA
TPAASEEESGEGTQKRRRGRRGGRRRRRGSGEATSTDGSLDLDADNTADAGGEASDVPVA
HSSQPEFDFVDDAVTTQPDARRVADAPAAAPAVAPQAVPPATPAAVAVAAASATTSKAGG
AARQTPTAAGIEGESAVAAPAETQGEATTAALAPDAGAVRTTAAEPTEPTEPTPEPTSEP
TSEPTSEPTSEPTSEPTAESASGSAAEPGIDPVEESSAAAGAESPAAVGFPVEPAVSGHT
IASAAPAAPFEPASPQPRGLFDNLEQPGPEVDAGEVDSTPADAAADAAADAEAGTDHKDD
DQAPSGA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgatcaatgcgacgcaggctgaagagctgcgcgtcgccatcgtcgat
ggccagaccctgtacgacatcgacatcgagcaaccctcgaaggaacagaagaagtccaac
atctacaagggccgcatcatccgcatcgagccctcgctcgaggcggccttcatcgaatac
ggcgccgaccgccatggcttcctgccgctgaaggaaatctcccgcgactacttcgccgca
ggcgtcgaccacaacaaggccggcatcaaggaactgctgcgcgagggccaggaagtcgtg
gtccaggtggacaaggacgagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccaccgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgagctgaagaaggcgatggactcgctcacgatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgggacgccgaagagctgcag
tgggacctcgactacctgctctcggtctggaaggccgtggccgaggccgcgctcagcaag
cccgcgcccttcctgatctaccaggagtcgcgcctgatcatccgcgcgctgcgcgactac
atgcgggccgatatcggcgagatcctggtcgacaccccggagatgtacgccgaggcgcgc
gagttcgtcgaacaggtgatgccgcacaacctgcgcaagctcaagcactacaccgacgac
gtcccgctgttcaaccgcttccagatcgagtcgcagatcgagaacgcctacgagcgcacc
atccgcctgccctcgggcggcgcgctggtgatcgaccagaccgaggccctgaccgcggtc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgcgttccacacc
aacctggaagcggccgatgaagtggcccgccagctgcgcctgcgcgacctcggcggcctg
gtggtgatcgacttcatcgacatgtcgtcgaacaagcaccagcgcgaggtcgagaaccgc
ctgcagagcgcactcaggtacgaccgcgcgcgcgtgcagctgggccgcatctcgcgcttc
gggctgctggagatgagccgccagcgactgcgcgcgagcctgggcgaatccagccagatc
gtctgcccgcgctgcgagggccacggccgcatgcgcagcgtcgagtcgctggcgctggcg
atcatccgcctggccgaagagcacgcgatgaaggacaacaccgggcaggtgctcgtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgcagcgcgctgggcgagatc
gagacccgccacaaggcgccgatcgtgatcgtcgccgacgagcagctgcacacgccgcat
tacgaagtcacccgcctgcgcgccaacgagctcgacgaggaagcttcgaagccgagctat
cgccgcggcaccccacgcaaggtcgccaccatcgcgctgaccaaggccaacctcaacgtg
ccggcggccgcggtcaccaaggtccagcatgcgcgccccgcgcccgtgcgcgaaccgcgt
ccggaggcggcacccgcgccggcaccggcaccggcacccgtcctcgcgccggtcgcggcg
cccgccagcggcggcatcgtcggctggctgaaggcgctgttcgtcgggcagcccgccgtg
gaggccgtgaagccgggcgacgcgaagacggacgggcggcgtcgcgacgagcgcggccag
cgccaggagcgcgacggccgcggcagccgcaacggcggccgcgaagggggccgccgcgac
ggccgccgtggcggcggcggcgagcagcaggtccaggctggcggcaggcagaaaacgacc
ggtcagcagggacaggcggcccagagccagggcacccagggcagccaggactccccgggc
gcgacccagaagccgccgcgcgagaagccgcagcgcgagaagcgcggcgaacgcaccgcc
ggcgagcgcggtggccaggggcaggagcggcagcgccgcggcgaacagccgcaggcacct
tcggacagccgtgccggcaagcagccggaggtggctgccgacgcggcagccgccgcggtc
gcggcagccgcgaccgccacgactgcggtcacgaaggacgcatcgccgatcccgacacag
tccactgaccctgctgtcaccggcgaggtctcgcgtcccgcttccgggcccgcgacgtcc
gccacggaggcagccgattccggcgccgatgccctccaggcgggtgcggccagcggcgcc
acgcctgcggcttccgaagaagaatccggcgaaggcacgcagaagcgccgtcgcggccgt
cgcggcggccgtcgccgccgtcgcggctccggagaggccacgagcactgacggcagcctg
gatctggacgccgacaacaccgcggatgccggcggggaggcgtccgacgtcccggtggcg
cacagctcgcagcccgaattcgacttcgtggacgacgctgtgaccacgcagcctgacgcc
cggcgggtggccgatgcccccgccgccgcgccggcagtcgccccacaggccgttccgccc
gcgactccggcagcggtcgcggtcgcggccgcatccgcaacaacatccaaggcgggaggt
gctgcacggcagacgccgacggctgccggcatcgagggagagagcgccgtcgccgcgcct
gcggaaacgcagggtgaggccacgacggcagcgctcgcgccggacgccggggcggtgagg
acgacagctgccgagccgaccgagccgaccgagccgactcccgagccgacttccgagccc
acttccgagccgacttccgagcccacttccgagcccacttccgagccgaccgccgaatcg
gcctccgggtcggccgccgagcccggaatcgatccggtcgaggagtcgtccgccgctgcg
ggcgccgaatcacccgcggcagtcggcttccccgtggagccggccgtttccgggcacacg
atcgcatctgccgcgcctgcagcgccgttcgagcctgcgtcgccgcagccgcgcggtctg
ttcgacaatctcgagcagccgggcccggaagtggatgccggcgaggtggacagcacgccc
gccgacgcggccgccgacgcagccgccgacgcggaagcaggaaccgaccacaaggacgac
gatcaggcgccctccggcgcctga
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