Luteolibacter sp. LG18: llg_05310
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Entry
llg_05310 CDS
T09979
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lui
Luteolibacter sp. LG18
Pathway
lui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
llg_05310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lui03019
]
llg_05310
03009 Ribosome biogenesis [BR:
lui03009
]
llg_05310
Enzymes [BR:
lui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
llg_05310
Messenger RNA biogenesis [BR:
lui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
llg_05310
Ribosome biogenesis [BR:
lui03009
]
Prokaryotic type
rRNA helicases
llg_05310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
PDGF_N
Cas3-like_C_2
RNaseH_C
Motif
Other DBs
NCBI-ProteinID:
BCU75816
LinkDB
All DBs
Position
complement(648503..650182)
Genome browser
AA seq
559 aa
AA seq
DB search
MDTPPFSELGLPEELLAAIESLGFERPSPIQALSIPVALTGSDLLGLSQTGSGKTAAFAL
PVLAKIDLKVHAPQALMVCPTRELAVQVCEEVHRLGEKMRGLRAVPVYGGAPMDRQLRAL
RDGAHIVVGTPGRLLDHVRRGSFDTSRIAHVVLDEADRMLDLGFREEMEEMLAALPKERQ
TLFFSATMSQGVKRLIEHFGRDPKTVKVEQKSMTVSTIDQSCIEVRERSKVEVISRLLDM
EAPKLAIIFCNTKRAVDECTEALLARGYSADRLHGDITQQMRERVLKRFRDGIIEVLVAT
DVAARGLDVEDIEAVFNYDLPQDPEDYVHRIGRTGRAGRSGRAVSFVFGREIHRLEMIER
YTRHPIRRERVPSQEQVEGKLADQLFEEVKDRLTESKFNSYQDQMDRLLEQGFTPTDVAS
VLFTMLRESSGREFGEIAEDREEPRERRRPGDRPVREPREPRERAPRGDDADMTPLFFSL
GKMHGVRPGEIVGMLYGEAGLPQGSIGHIKLFDKHSRIDVRTEHAERLLQIVKGIKLRGR
PFILDYDRGPGDRTRGHGH
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcctcccttctccgaactcgggcttcccgaggaattgctcgccgccattgaa
tccctgggtttcgagcgcccgtcgccgatccaggcgctttccatcccggtggctctcacc
ggctccgacttgctcggcctttcccagaccggctccggcaagaccgcggccttcgcgctg
ccggtgctggcgaagatcgacctgaaggtgcacgcgccgcaggcgctgatggtgtgcccg
acccgcgagctcgcggtgcaggtctgcgaggaagtccaccgcctcggcgaaaagatgcgc
ggcctgcgcgcggtgccggtgtacggtggcgcgccgatggaccgccagctccgcgcgctg
cgggacggtgcccacatcgtggtgggaaccccgggccgcctgctcgatcacgtgcgccgc
ggttccttcgatacctcccggatcgcccacgtggtgctggatgaggcggaccgcatgctc
gacctcggtttccgtgaggagatggaggagatgctcgcggccctgccgaaggagcgccag
acgctgttcttctccgcgacgatgagccagggcgtgaagcgcctgatcgagcacttcggc
cgcgatccgaagacggtgaaggtggagcagaagtcgatgaccgtctcgaccatcgaccaa
tcgtgcatcgaggtgcgtgagcgctcgaaggtggaggtgatctcccgcctgctcgacatg
gaggccccgaagcttgcgatcattttctgtaacaccaaacgcgcggtggacgagtgcacc
gaggcgctgctggcgcgtggctattccgccgaccgcctccacggtgacatcacccagcag
atgcgcgagcgcgtgctgaagcgtttccgcgacggcatcatcgaggtgctcgtcgccacc
gatgtggccgcgcgcggcttggacgtcgaggacatcgaggcggtgttcaactacgacctg
ccgcaggacccggaggattacgtgcaccgcatcggccgcaccggtcgtgccggtcgcagc
ggccgcgcggtgagcttcgtgttcgggcgtgagatccaccgcctggagatgatcgagcgc
tacacgcgccacccgatccgccgcgagcgcgtgccgtcccaggagcaggtggagggcaag
ctcgccgaccagcttttcgaggaagtgaaggaccgcctcaccgagtcgaagttcaattcg
taccaggaccagatggaccgcctgctcgagcagggcttcacgcccaccgacgtggcgagc
gtgctattcaccatgctgcgcgagtccagcggccgtgagttcggcgaaatcgcggaggac
cgcgaggagccgcgcgagcgccgccgcccgggcgatcgtccggtccgcgagccgcgtgaa
ccccgcgagcgcgcgccgcgcggcgacgacgcggacatgacgccgctgttcttctcgctc
gggaagatgcatggcgtgcgtcccggtgaaatcgtcggcatgctctacggtgaagcgggt
ctgccgcagggctccatcggccacatcaagctgttcgacaagcacagccgcatcgatgtc
cgcaccgagcacgccgagcgcctgctccagatcgtgaagggcatcaagcttcgcggccgt
ccgttcatcctggattacgatcgcggcccgggcgaccggacacgcggccacggccactga
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