Luteolibacter sp. LG18: llg_11940
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Entry
llg_11940 CDS
T09979
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lui
Luteolibacter sp. LG18
Brite
KEGG Orthology (KO) [BR:
lui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lui03016
]
llg_11940 (rtcB)
Enzymes [BR:
lui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
llg_11940 (rtcB)
Transfer RNA biogenesis [BR:
lui03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
llg_11940 (rtcB)
Prokaryotic type
tRNA splicing ligases
llg_11940 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCU76479
LinkDB
All DBs
Position
complement(1414569..1416050)
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AA seq
493 aa
AA seq
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MNIHKTDEALGFIPLPNDSGKPITVVGTDAIRDHFDSTCLQQAVNSRLAPGVTDVILNPD
GHAGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQLDIPEDAIVDKKVRRALINAIIER
TPTGAGRGQRTVKKSRRVDQSTGVLAVTEGATARVCEALGIPPEWATRCEDSTHHGHDGT
YDALRSRLDFILASGLVRNFASKIEQLGSYGGGNHFGECEITRLSDRPSMLAAADTFGLK
DGHVSFLSHCGSRGLGNLLAQGQFKDLEHKFRQWATPFPAGDKQLVYAPLGTPEADAYLD
DMAIGANFATVNHLLINALVLEAFQEVLPGAQGNLVYFISHNIAREEVLDGKKAWVHRKG
ATRAIPGGHFSLAGTPFAETGHPILLPGNPRDGSVVMVAKGGAERTAWSVNHGAGRQMGR
KHAARTLDQKSVDADFDASDILTNCRQYPIDEAPDAYKNFPEVLRSVEAAGLAETVAKLQ
ARFVIKDSAEADD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaacatccacaagaccgatgaagcgctgggcttcatccccctcccgaatgactccggc
aagccgatcaccgtggtcggaaccgatgcgatccgcgaccacttcgactccacctgcctc
cagcaggcggtcaattcccgcctcgccccgggagtgacggacgtgatcctcaacccggac
ggccacgccggttacggtgcgccggtcggctgcgtgatggtttcgccgacccacatctat
ccgggcccggtgggcgtcgacatcaagtgctcgatgtcgctgctccagctcgacatcccg
gaggacgcgatcgtcgacaagaaggtccgccgcgcgttgatcaacgccatcatcgagcgc
actccgaccggtgctggccgtggccagcggaccgtgaagaagtcgcgccgcgtggaccag
tcgaccggcgtgctcgccgtgaccgagggtgccaccgcccgcgtctgcgaggccctcggc
atcccgcccgaatgggcgacccgatgcgaggactccacgcaccacggccacgatggaacc
tacgacgcgctccgtagccgcctcgacttcatcctcgcctccgggctggtgcggaacttc
gcgtcgaagatcgaacagctcggctcctacggcggaggcaaccacttcggcgagtgcgag
atcacccgcttgtcggaccgtccgtcgatgctcgccgccgcggacaccttcggcctgaag
gacggccacgtgtcgttcctcagccactgtggatcgcgcggcctcggcaacctgctcgcg
cagggccagttcaaggacctggagcacaagttccgccagtgggccacgccgttcccggcc
ggggacaagcagctcgtctacgcgccgctcggaacccccgaggcggatgcctaccttgat
gacatggccatcggcgcgaacttcgccacggtgaaccacctgctcatcaacgcgctcgtg
ctggaagccttccaggaagtcctgccgggcgcgcagggaaacctcgtttacttcatctcg
cacaacatcgcgcgggaagaggtgctcgatggcaagaaggcctgggtccaccgcaagggc
gcgacccgcgcgatcccgggcggtcacttctcgctcgccggaaccccgttcgcggaaacc
ggtcacccgatcctgctgccgggcaacccgcgcgacggctcggtggtgatggtggcgaag
ggcggggccgagcgcaccgcctggtcggtcaaccacggcgccgggcgacagatgggccgg
aagcacgcggcgcgcacgctcgaccagaagtcggtggacgcggacttcgatgcctcggac
atcctgacgaactgccgccagtacccgatcgacgaagcaccggacgcctacaagaatttc
ccggaggtgttgcggagcgtcgaggccgccggtctcgccgaaaccgtggcgaagctccag
gcccgtttcgtgatcaaggactccgccgaagcggacgattaa
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