Luteimonas sp. JM171: BGP89_11550
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Entry
BGP89_11550 CDS
T10109
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
luj Luteimonas sp. JM171
Pathway
luj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
luj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGP89_11550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
luj03019
]
BGP89_11550
03009 Ribosome biogenesis [BR:
luj03009
]
BGP89_11550
Enzymes [BR:
luj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BGP89_11550
Messenger RNA biogenesis [BR:
luj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BGP89_11550
Ribosome biogenesis [BR:
luj03009
]
Prokaryotic type
rRNA processing factors
BGP89_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AOH36912
UniProt:
A0A1B3WA25
LinkDB
All DBs
Position
complement(2476390..2479506)
Genome browser
AA seq
1038 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSQEQKKSNIYKGRITRLEPSLEAAFVEYGGN
RHGFLPLKEISRDYYQAGVDHKAGIRELLREGQEVVVQVEKEERGNKGAALTTFISLAGR
YMVLMPNSPTAGGVSRRIEGEDRAELKRAMDALEIPDDMGVIIRTAGVGRDAEELQWDLD
YLLSIWKAICDAALSKPAPFLIYQESRLITRALRDYMRSDIGEILVDTPEMYEEAKDFVE
QVMPHNLRKLKHYTDDTPLFNRFQIESQIESAYERTISLPSGGALVIDQTEALTAIDVNS
ARATRGGDIEETAFHTNLEAADEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENRLQGA
LKYDRARVQLGRISKFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSVESLSLSIIRV
AEEHAMKDNTGQVLVQAPLEIANYLLNEKRAALAEIESRHKAPIVIVADEHLQTPHYEVT
RIRENELGEETSRPSYQRGTPRKVNTIALNKSNLNVPPPAVRNVRPAQPAPVREPREEAP
APAPAPAPAPAPAAPVAAVGFMGWLKSLIVGAPAEEAPKERRPSADGKERGERSGQQRRG
RQGRSDERRDGERRDQKPRRARGQGQGNGERDQQDKQDRPARAKQARGQKQAQQPRRERQ
KQSPDQPDVRTEEAARQQKAATEAPRGQRNRQDDADAQPRAAAPATPQDTATRPSADERE
PAAAQTQRADGSEQPDRGEGAPAAGEGTGRRRRGRRGGRRRRRSGQGGENAAAGADGGPN
APAEDAADIPAAQASQPEFDFDDGQASTADNAAKRQRNPRVAASDTAGQAQDAGGDAGRA
EAGQPQAKPDAASSAGDAKTPSADPKPAAAAAPVATENAPGNAPANRDPLPEKQQTAPAA
RPAPRASVPASPAPEAAADAAPAREQASAPAPATPAEPAPKPAAERSTVAAPAAPSDTGP
VKAAGAVAGNRGDSNTGRAATPGATQELFETPAPARPSTDRPHQEATAKAGADSKPEQPA
RSGSDSGPEQPADEPRSA
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgccacgcaggcagaagaactgcgcgtggcgatcgtggacggccagacc
ctgtacgacatcgacatcgagcagccgtcccaggaacagaagaagtccaacatctacaag
ggccggatcacccggctggaaccatcgcttgaagccgccttcgtcgaatacgggggcaac
cgccacggcttcctgccgctgaaggaaatctcccgcgactactaccaggccggcgtcgac
cacaaggccggcatccgcgagctcctgcgcgagggccaggaagtggtggtgcaggtggag
aaggaagagcgcggaaacaagggcgctgccctgaccaccttcatctcgctggccggccgc
tacatggtgctgatgcccaactcccccaccgccggcggcgtctcgcgccggatcgagggc
gaggaccgcgccgagctgaagcgtgcgatggacgcgcttgagatccccgacgacatgggg
gtgatcatccgcaccgctggcgtcggccgggatgccgaggagctgcagtgggacctggac
tatctgctgagcatctggaaggcgatctgcgacgccgcgctgagcaagccggcgccgttc
ctgatctaccaggaatcgcgcctgatcacccgcgccctgcgtgactacatgcgctcggac
atcggcgagatcctggtcgatacgccggagatgtacgaggaggccaaggatttcgtcgag
caggtcatgccgcacaacctgcgcaagctcaagcactacaccgacgatacgccgctcttc
aaccgcttccagatcgaatcgcagatcgagagcgcgtacgagcgcaccatctctctcccc
tccggcggcgccctggtgatcgaccagaccgaggccctgaccgcgatcgacgtcaactcg
gcgcgcgccacccgcggcggtgacatcgaggaaaccgcattccacaccaacctggaggcg
gccgacgaagtggcgcgccagctgcgcctgcgcgaccttggcggactggtggtgatcgat
ttcatcgacatgtcctccaacaagcaccagcgggaggtggaaaaccgcctgcagggcgcg
ctcaagtacgaccgcgcgcgggtgcagctgggccggatctccaagttcggcctgctggag
atgagccgccagcggctgcgcgcgtcgctgggtgaatccagccagatcgtgtgcccgcgc
tgcgagggccacggccgcatgcgcagcgtggaatcgctgagcctgtcgatcatccgcgtg
gcagaagagcatgcgatgaaggacaacaccggccaggtgctggtgcaggcgccgctggag
atcgccaattacctgctcaacgagaagcgcgccgcgctggcggagatcgaaagccggcac
aaggcgccgatcgtcattgttgccgacgaacacctgcagaccccgcactacgaggtcacg
cggatccgcgaaaacgagcttggcgaggaaaccagccgtccgagctaccagcgcggcact
ccgcgcaaggtcaacaccatcgccttgaacaagtccaacctcaacgtgccgccgccggcc
gtgcgcaacgtgcgaccggcccagcctgcgcccgtgcgcgagccgcgcgaggaagcgcct
gccccggcaccggcgccggcccccgctccggcccctgccgcgccggtggccgccgtgggc
ttcatgggctggctgaaatcgctcatcgtcggggcgcccgcagaagaggccccgaaggag
cgccgtccgtccgcagacggcaaggaacgcggtgagcgcagcggccagcagcgacgcggc
cgccaggggcgcagcgacgagcgccgcgatggcgagcggcgcgatcagaagccgcgccgg
gcccgcggccagggccagggcaacggcgagcgcgaccagcaggacaagcaggaccgccct
gcccgggccaagcaggcccgcggccagaaacaggcgcagcagccccggcgtgagcgccag
aagcaatcccccgaccagccggatgtgcgcacggaagaggctgcccggcagcagaaggcc
gcgaccgaggcgccccgcgggcagcggaaccggcaggacgacgcggatgcgcaaccgcgg
gccgcggcgcctgccaccccgcaggacaccgcaacccgcccgtccgccgacgagcgcgag
ccggcggctgcgcagacccagcgcgccgatggcagcgagcagcccgatcgtggcgaaggc
gcacccgcagctggcgaaggcacggggcgtcgccgccgtggccgtcgcggcggtcgccgc
cggcgccgcagcggccagggcggggaaaacgctgcggccggcgccgacggcggaccaaat
gcgcctgccgaggatgccgccgacatcccggctgcccaggcgtcgcagcccgagttcgac
ttcgacgacggccaggccagcacggcggacaatgcggccaagcgccagcgcaacccgcgc
gtagccgcttcggacaccgctggccaggctcaggacgctggtggggacgccgggcgggct
gaagccggtcaaccgcaggcgaagccggatgcggcatcgtccgccggggatgccaagaca
ccgtccgcggatccgaagccggctgcagccgcggccccggtcgctacggagaatgccccg
ggcaatgcccccgccaaccgggatccgctgcctgaaaagcagcagactgcgcctgccgca
cggccggccccccgggcttccgtgcctgcatcgcctgcacctgaggcggcggcggacgcc
gctccggcgcgtgagcaggcatccgcaccggcgcccgcaacgccagcggaacctgcgccg
aagcctgctgctgaacgctcgacggtcgctgcgcccgctgccccgtcggacaccggcccg
gtcaaggctgcgggcgcggtggcgggcaatcggggggattcgaacaccgggcgtgcggca
acacccggcgccacccaggaactgttcgaaacccctgcccccgcgcgtccgtccactgac
aggccccatcaggaagccaccgccaaggccggcgcggattcaaagccggagcagcccgcc
aggtccggaagtgattccggcccggagcagcctgccgacgaaccccgcagcgcctga
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