Luteimonas sp. JM171: BGP89_12290
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Entry
BGP89_12290 CDS
T10109
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
luj Luteimonas sp. JM171
Pathway
luj02020
Two-component system
luj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
luj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BGP89_12290
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BGP89_12290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
luj03021
]
BGP89_12290
Transcription machinery [BR:
luj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BGP89_12290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
HTH_31
Sigma70_r4
HTH_Crp_2
TrmO_C
HTH_23
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
AOH37577
LinkDB
All DBs
Position
2637972..2639384
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AA seq
470 aa
AA seq
DB search
MKQTASTSMQMGQQLNLTPQLLQSIRLLQFNALELEQEIRRVLELNPLLEIEEEPEAAPA
SAETDPATETAAFDELPEPSMWDTPGASWHDGMDDGMQRIADGGSTDPMLRILEAAALEL
PAADLEIAAFWLEHCDDAGYLSAPLAALTLRACARFDRPAADIERVRQCLLAGDPAGVAA
QDLRECLSAQLAALPAPVAGRPLASAIVDSGLDLLATHDLAALALRLQREEDDVAEAVRL
ILSLDPRPAEAAAPQARNAVIPDVVVWHADGSWRVALNRANAPRVSINAGYERALAEAGN
GAASAPMREMLQEARWFTRGLSMRYDTLLRTARVIVERQSAFLQRGEEALAPLTLKEVAD
AIGMHESTVSRITTGKYLQTPRGTIEMKRFFGVRLEGASVSGSAVRAMVKRLIDAEPPQR
PLADEAIATLLARRGIRIARRTVAKYREQMDIAPARARRRAASPSLARTG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagaccgccagtacgtcgatgcagatgggccagcagctcaacctgacgccgcag
ctgctgcagtcaatccgccttctgcaattcaacgcgctggagctggagcaggaaatccgc
cgggtcctggagctcaacccgctgctggagatcgaagaggagcctgaggccgcgccggcc
tccgcggagaccgatcccgccaccgaaaccgcggccttcgacgagctgcccgaaccgtcc
atgtgggataccccgggcgccagctggcacgacgggatggacgatggcatgcagcgaatc
gccgacggcgggtcgaccgacccgatgctgcgcatcctcgaagcggcggccctcgagctg
cccgccgccgacctggagatcgcggccttctggctggaacactgcgacgatgccggctac
ctgtccgcgcccctggcggcgctgaccctgcgcgcctgcgccaggttcgatcgcccggcc
gccgatatcgagcgcgtccgccagtgcctgctggccggcgacccggcgggcgtggcggcg
caggacctgcgcgaatgcctttccgcccagctggccgccctgcccgcccccgtggccggc
cggccgctggccagcgccatcgttgattcgggcctggacctcctggccacgcacgacctg
gccgcgctcgcgctgcggctccagcgcgaggaggacgacgttgccgaagccgtgcgcctg
atcctgtcgctggacccgcggcctgccgaagccgcggccccgcaggcccggaatgccgtg
atccccgacgtggtcgtctggcacgccgacggcagctggcgggtggccctcaaccgcgcc
aacgcgcccagggtgtcgatcaatgccggctacgagcgcgccctggccgaagccggcaac
ggcgccgccagtgcccccatgcgtgaaatgctgcaggaagcccgctggttcacccgcggc
ctgtccatgcgctacgacaccctgctgcgcaccgcgcgggtgatcgtggagcgccagagc
gccttcctgcaacgcggcgaggaggccctcgctccgctcaccctcaaggaagtcgccgac
gcgatcgggatgcacgagtccaccgtctcgcgcatcaccaccggcaagtacctgcagacc
ccgcgcggcaccatcgagatgaagcgcttcttcggcgtgcggctggagggcgccagcgtc
tccggcagcgccgtgcgtgccatggtcaagcggctgatcgacgccgagccgccgcagcgc
ccgctggccgacgaggccatcgccaccctgctcgcgcgccgcggcatccgcatcgcccgg
cgcacggtggccaagtaccgtgaacagatggatatcgccccggcgcgcgcgcgccgccgg
gccgcgtccccttccctggcgcgcaccggctga
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