Luteimonas sp. JM171: BGP89_13160
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Entry
BGP89_13160 CDS
T10109
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
luj Luteimonas sp. JM171
Pathway
luj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
luj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGP89_13160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
luj03019
]
BGP89_13160
03009 Ribosome biogenesis [BR:
luj03009
]
BGP89_13160
Enzymes [BR:
luj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BGP89_13160
Messenger RNA biogenesis [BR:
luj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BGP89_13160
Ribosome biogenesis [BR:
luj03009
]
Prokaryotic type
rRNA helicases
BGP89_13160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AOH37179
UniProt:
A0A1B3WAT2
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All DBs
Position
2833505..2835274
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AA seq
589 aa
AA seq
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MSADTPRFSDLDLPEPLMRALADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAF
ALPILAQLDPRAGKPQALVLAPTRELAIQVAEAFQTYSRHLPGFQVLPVYGGQGYGQQLS
ALRRGVHVVVGTPGRVIDHLERGTLDLSELRCLVLDEADEMLRMGFIDDVEAVLKKTPET
RQVALFSATMPPQIRRIAQTYLKDPVEVSIKATTTTATRIRQRYWMVSGVHKLDALTRIL
EAEPFDAMIVFARTKLGTEELADKLAARGLSAAAINGDIEQKQRERIIAQLKDGRIDVLV
ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRERGMLRAI
ERATRQPIEQMELPSVEAVNERRVAKFMDRIGSGLQADDLGQYRELVERYEREHDVPAIE
IAAALARQLQGHTPLFLEAPRERPKPARFEQRPRATERAPRKARPAPAGGAAREPEIGME
TFRLEVGHAHGVQPGNIVGAIANEADLESRYIGRIDIRDDYSLVDLPEGMPREILEHLKK
VRVGGQELRMRRADAADTGAPPRGKRPFQRKPHRGKPAHPRKPVGRPRS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgacaccccccgtttttccgacctcgacctgccagagccgctgatgcgggcc
ctggccgacgtcggctatgaatccccctcgccgatccaggccgccaccatcccgccactg
ctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaagaccgccgcgttc
gcgctgccgatcctggcccagctggacccgcgcgcgggcaagccccaggcgctggtgctg
gcgcccacgcgcgaactggcgatccaggtcgccgaggccttccagacctactcacgccac
ctgcccggtttccaggtgctgccggtgtacggtggccagggctacggccagcagctctcg
gcgctgcgccgcggcgtgcacgtggtggtcggcaccccgggccgggtaatcgatcacctt
gaacgcggcacgctcgacctgtccgaactgcgctgcctggtgctggacgaggccgacgag
atgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagacccccgagacc
cgccaggttgcgctgttctcggccaccatgccgccgcagatccggcgcatcgcccagacc
tacctgaaggatcccgtggaggtctcgatcaaggccaccacgaccaccgccacccgcatc
cgccagcgctactggatggtcagcggcgtccacaagctcgacgcgctgacccggatcctg
gaggccgagcccttcgacgcgatgatcgtgttcgcccgcaccaagctgggcaccgaggag
ctggccgacaagctggccgcgcgcgggctgtcggcggcggcaatcaacggcgacatcgag
cagaagcagcgcgagcgcatcatcgcccagctcaaggacgggcgcatcgacgtgctggtg
gccaccgacgttgccgcgcgcgggctggacgtggagcggatcagccacgtgctcaattac
gacatcccctacgacaccgaaagctacgtgcaccggatcggccgcaccggccgcgcgggg
cgcagcggcgaggcgatcctgttcgtcacgccacgcgagcgcggcatgctgcgcgcgatc
gaacgggccacccggcagccgatcgagcagatggagttgcccagcgttgaagccgtcaac
gagcgccgggtggcgaagttcatggaccgcatcggcagcggcctgcaggccgacgacctg
ggccagtaccgcgagctggtggaacgctacgagcgcgagcacgacgtgccggcaatcgag
atcgcggcggcgctcgcccgccagctgcagggccataccccgctgttcctcgaggcgccc
agggagcgcccgaagccggcccggttcgaacagcgcccccgcgccacggagcgggcgccg
cgcaaggcgcgtccggcgccggcgggcggtgctgcacgcgagccggaaatcgggatggag
acgttccggctggaagtcggccatgcgcacggcgtccagccgggcaacatcgtgggcgcc
atcgccaacgaggcggacctggagagccgctacatcgggcgcatcgacatccgcgacgac
tacagcctggtggacctgcccgaaggcatgccgcgcgagatcctggaacacctgaagaag
gtacgcgtgggaggccaggagctgcgcatgcgccgcgccgacgccgccgacaccggcgcg
ccgccccgcggcaagcgtccgttccagcgcaagccgcaccgcggcaagccggcgcacccg
cgcaagccggtgggccggccgcgcagctag
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