Urechidicola croceus: LPB138_09125
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Entry
LPB138_09125 CDS
T04497
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lul
Urechidicola croceus
Pathway
lul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB138_09125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lul03019
]
LPB138_09125
03400 DNA repair and recombination proteins [BR:
lul03400
]
LPB138_09125
Enzymes [BR:
lul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB138_09125
Messenger RNA biogenesis [BR:
lul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB138_09125
DNA repair and recombination proteins [BR:
lul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPB138_09125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
GerE
zf-CXXC
DHquinase_II
SPK
Motif
Other DBs
NCBI-ProteinID:
AOW20827
UniProt:
A0A1D8P8D1
LinkDB
All DBs
Position
complement(2009645..2011759)
Genome browser
AA seq
704 aa
AA seq
DB search
MQVKEYESQLIPTLKKYFGYDSFRAQQQEIIESILEGKDSIVIMPTGGGKSMCFQLPALL
FDKLTLVISPLIALMKDQVDGLNANGIPAAFFNSSQEEVEQHHIFEQIAKSELKLLYVAP
ESLPLLNNILTESYISCIAIDEAHCISSWGHDFRPSYQQLGFLKNTLPNIPIVALTATAD
KATRQDIAEQLNIPKAKQFIASFDRKNISLEVRPANDRISQIVKFIQQRPNESGIIYCLS
RKSTEQLASKLNDKNIKAMSYHAGLTFEERNKAQEDFIFDKIQIVCATVAFGMGIDKSNV
RWVIHYNMPKNIEGYYQEIGRSGRDGLDAKALLFHSYADVIQLRRFAEGSANEEVQIAKL
DRMKQFSEATVCRRKILLSYFGELIEKDCGNCDVCKNPPTHFDGTILAQKALSAITRLKE
SEAIGVVIDVLRGAKNATILDKKYDQLKTYGMGKDVSWKDWQHYIIQLINQGVCEIAFHE
NNALKLTDFSKKVLFEKAKVNLTRPIEIDKTIEKKKTKKSSKVSTSDLFERLRQLRHKIA
LEENIPAYLVFNDATLKEMERARPMSESEFLEISGVGQRKMEVYGDEFIAEITAFMNEKV
KKRKVDTVKVTYDLYKEGLTVEEIAEKRSLKTPTIFSHLANLYSQGKDIDLYQFVSKEEV
SQIEKAKTALESPETLKPYFEYFEEKIDYSKIRLALTILEADTN
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtaaaagaatacgaatctcaattaattccaaccttaaaaaaatattttggttat
gatagttttagagcacaacagcaagaaattattgaatcaattttagaaggaaaagatagt
attgtgataatgcctacaggaggaggaaaatcaatgtgctttcaattacctgcattattg
tttgataaattaaccttagtaatttctccattaattgccttaatgaaagatcaagttgat
ggattgaatgccaatggaattcctgcagcattttttaatagtagtcaagaggaggtagag
caacatcatatttttgaacagattgcaaaatctgaattgaagttattgtatgttgctcct
gaaagtttacccttgttaaataatatattaactgaaagttatattagttgtattgcaata
gatgaagcacattgtatatcatcttggggacacgattttagaccttcatatcagcagtta
ggatttttaaagaatacattgcctaatattccaattgttgctttgactgctacagccgat
aaggcaacaagacaagatattgctgagcaattaaatattccaaaagccaaacaatttatt
gcttcatttgacagaaaaaacatatcattagaagttcgtcctgcaaatgatagaattagt
cagattgtaaagtttattcagcaaagaccgaatgaatcaggaataatttattgtttgagc
agaaaatctacagaacaattggcatctaaattaaacgataaaaatatcaaagcaatgtct
tatcatgcaggtttgacttttgaagaaagaaataaagcacaagaagattttatttttgac
aaaattcagattgtttgtgctacagtagcctttggaatggggatagacaagtctaatgtt
cgttgggtaattcattataatatgcctaaaaatattgaaggctattatcaagaaattggt
cgttcaggaagagatggtttagatgcgaaagcattattatttcatagttatgcagatgtc
attcagttacgaagatttgcagaaggaagtgcaaatgaagaggttcaaattgccaagtta
gatagaatgaaacagttttcagaagcaacagtatgcagaagaaagattttgttgagttat
tttggagaattgattgagaaagattgtggaaattgtgatgtatgtaagaatccaccaaca
cattttgatggaacaattttggctcaaaaagcgttatcagcaataactagattaaaagaa
tcagaagcgataggagttgttatagatgtacttcgtggtgccaaaaacgcaacgatttta
gataaaaaatacgatcaattaaaaacctatggaatgggtaaagatgtttcatggaaagat
tggcaacattatattatacaactaattaatcaaggtgtatgtgaaatagcatttcatgaa
aataatgcacttaaactgactgatttttcgaagaaagtcctttttgaaaaggcaaaagtt
aatctaactagaccaattgaaatagataagacgattgagaagaagaaaaccaaaaaatca
tctaaagttagtacaagtgatttgtttgaacgattacgacaattgagacataaaattgct
ttagaagaaaatatcccagcctatttagtgtttaatgatgctactttaaaagaaatggaa
cgtgcaagaccaatgagtgaatcggagttcttagaaataagtggtgtaggtcaacgcaaa
atggaagtgtacggagatgaatttattgctgagattactgcttttatgaatgaaaaagta
aaaaagcgtaaagttgatactgtaaaagttacgtatgacctatacaaagagggattgact
gttgaagaaattgcagaaaaaaggtcattaaaaacacctacaattttttctcatttggca
aatttatattcacaaggaaaggatattgatttgtatcaatttgtttcaaaagaagaggtt
agtcaaattgaaaaagcaaaaacagcattggaaagtccagagactttaaaaccatatttt
gaatattttgaggagaaaatagattactcaaaaattagattagcacttacaattcttgaa
gcagataccaattaa
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