Luteimonas chenhongjianii: CNR27_11620
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Entry
CNR27_11620 CDS
T05077
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lum
Luteimonas chenhongjianii
Pathway
lum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNR27_11620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lum03019
]
CNR27_11620
03009 Ribosome biogenesis [BR:
lum03009
]
CNR27_11620
Enzymes [BR:
lum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CNR27_11620
Messenger RNA biogenesis [BR:
lum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNR27_11620
Ribosome biogenesis [BR:
lum03009
]
Prokaryotic type
rRNA processing factors
CNR27_11620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
ATD67994
UniProt:
A0A290XFQ2
LinkDB
All DBs
Position
2554732..2558028
Genome browser
AA seq
1098 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSREQKKSNIYKGRITRIEPSLEAAFVEY
GAARHGFLPLKEVSRDYFQSGVDPNKGSIKELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAELKKAMDVLAIPDEMGVIIRTAGVGRDAEELQ
WDLDYLLSIWRAIAEAALSKPSPFLIYQESRLITRALRDYMRADIAEILIDTPEMYAEAR
EFVEQVMPHNLRKLKHYTDDVPLFNRYQIESQIESAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQRDVENK
LQNALKYDRARVQQNKISKFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLS
IIRVAEEHAMKDNTGQVLVQAPVEIANYLLNEKRGALAEIEKRHDAPIIIVADEQLQTPH
YEVSRIRENELGEETARPSYQRGTPRRVATIALSKSNLNVPPPAVTNVRPSQPAPVREPR
PEPASPAPVAAPAPAPARPAPAPAAKAPVTGGGFMGWLRALFAPPAPAAKPAAPAQTERP
ARSDAGGQRSDSRGDRGARNGQRRDRRGNRQGQAPAGAESRPTAVAQPPREDVQREIRRE
EAVSTDADAGARKERRQRQKQRGPRQKTEGDVSEAQAPITAVASAAAVELAGKAPAPTGP
VTPTPEAASEAPGVAATPSPAAPRYAVATGDDTDGNDVDGADIDANADAGAGDAGDDDGS
NARRRRGRRGGRRRRRGKAGDGTSGDESSLDADDAGDDEAVVTNGHGQPEFDFDDLPAPP
APAPAPQSNRSEHVGPAAMAAAAVLTPADDAPHSAPQSAGETDVAENPADATTPEAETVE
PASAPIAIEPAQDQPTPDATADAAVETLPDPAQADTPEIADPAAQAVIDVSPTDAPAPVR
EVDRPAAESVSPEMTSNAPPAPAEAEMGASIPDETALAADAPIPSSRIEAEPVPASKPVS
QGLFDAPEPAPEVDRIGDAAAPDAEPAGVTPGDAGLADAPAAEPAALAAEGAEAADEDAT
ADAAGDRQDREAPRPQDA
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgcgacgcaggcagaagagctgcgcgtcgccatcgttgat
ggccagtccctgtacgacatcgatatcgaacagccgtccagggaacagaagaagtccaac
atctacaagggccgcatcacccgcatcgagccttcgctcgaggccgcgttcgtcgagtac
ggcgccgcccgccacggcttcctgccgctcaaggaagtctcccgcgactacttccagtcc
ggcgtcgacccgaacaagggctcgatcaaggaactgctgcgcgagggccaggaggtcgtc
gtccaggtcgacaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgccgaccgcgggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgagctgaagaaggcgatggacgtgctggccatcccg
gacgagatgggcgtgatcatccgcaccgccggcgtcggccgcgacgccgaggaactgcag
tgggatctcgactacctgctgagcatctggcgggcgatcgccgaggccgcgctgagcaag
ccctcgccgttcctgatctaccaggaatcgcggctgatcacccgggccctgcgcgactac
atgcgcgccgacatcgccgagatcctgatcgacacgccggagatgtacgccgaggcgcgc
gagttcgtcgagcaggtgatgccgcacaacctgcgcaagctcaagcactacaccgacgat
gtgccgctgttcaaccgctaccagatcgaatcgcagatcgagagcgcctacgagcgcacc
gtgcggctgccgtccggcggcgcactggtcatcgaccagaccgaggcgctgaccgcgatc
gacgtcaactccgcgcgcgccaccaagggtggcgacatcgaggagaccgcgttcaacacc
aacctggaggcggccgaggaagtggcccgccagctgcgcctgcgcgatctcggcggcctg
gtggtcatcgacttcatcgacatgtcgtcgaacaagcaccagcgggatgtcgagaacaag
ctgcagaacgcgctcaagtacgaccgcgcccgcgtgcagcagaacaagatttccaagttc
ggcctgctggaaatgtcacgccagcgcctgcgcgcgagcctgggcgagtcgagccagatc
gtgtgcccgcgctgcgaaggccatggccgcatgcgcagcatcgaatcgctgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggacaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactaccttctcaacgagaagcgcggcgcgctggccgagatc
gagaagcgccacgacgcgccgatcatcatcgtcgccgacgagcagttgcagaccccgcac
tacgaggtttcgcgcattcgcgagaacgaactgggcgaggaaaccgcacgtccgagctac
cagcgtggaacgccgcgccgcgtggcgacgatcgcgctgagcaagagcaacctcaacgtg
ccgcctccggccgtgaccaacgtccgcccctcccagcctgcgccggtgcgtgaaccccgg
cccgagcctgcttccccggctccggtggcggcacctgcccccgcccccgcgcgccctgct
ccggcacctgccgcaaaggcacccgtgaccggcggtggtttcatgggctggctgcgtgcg
ctgttcgcaccaccggcgccagcggccaagcctgcggctccggcccagaccgaacgtccg
gcgcgcagcgatgccggcggccagcgcagcgacagccgcggcgaccgtggcgctcgcaac
ggccagcgccgtgaccgtcgcggcaaccgtcagggacaggcgccagctggcgccgaatcc
cggcctacggccgtcgcgcaaccgccgcgcgaagacgtccagcgtgaaatccgacgcgaa
gaagcggtctccaccgacgccgatgccggcgcccgcaaggagcgccgtcagcgccagaag
caacgcggcccgcgtcagaagacagagggcgatgtcagcgaggcgcaggcgccgatcacg
gccgtcgcgtcggccgccgctgtcgagctcgccggcaaggcgccggctccgaccggcccg
gtaacgcccacgcctgaggccgcatcagaagctccgggcgttgctgcaacgccgtccccc
gccgcgccccggtacgccgtggccactggcgacgacaccgatggcaacgacgtggacggt
gcggacatcgacgccaacgccgatgcaggcgccggcgacgcgggcgacgacgacggcagc
aatgcccgccgccgtcgcggacgtcgcggcggtcgccgccgccgtcgtggcaaggcaggc
gatggcaccagcggcgacgagtcctcgctggatgccgacgacgctggcgacgacgaagcc
gtcgtcacgaatggtcacgggcagccggagttcgacttcgacgacctgccggccccgccc
gcgcctgcgcctgcgccgcagagcaaccgttccgagcacgtcggccctgccgccatggcc
gccgctgcggtgctgacgcccgccgacgacgcaccccactccgccccgcagtccgctggc
gagacggacgtggcggagaaccccgccgatgcgacgacgccagaggccgagacggtcgag
ccggcttctgcgccgatcgcgatcgagccggcgcaggatcagccgacgcccgacgcgacc
gcggacgcggccgtggagacgttgccggatccagcgcaggccgacacgcccgagatcgcc
gatccggcggcccaggccgtgatcgatgtctcgccaaccgacgcacccgcgccggtgcgg
gaagtcgatcggccggcggcggaatcggtgtccccggaaatgacgtcgaacgcccccccc
gcaccggcggaagcggagatgggcgcatcgattcccgatgagactgcgctcgctgcggac
gcgccgatcccgtcgtcacggatcgaggctgagccggtgccggcatcgaagccggtcagc
cagggcctcttcgacgcaccagagccggcgcctgaagtcgaccgcatcggcgacgccgca
gcgcctgatgcagagcccgcaggggtgacgccgggcgatgccggtctggcagatgcgccg
gctgcggagcccgccgcactggccgcggagggtgccgaggctgcggatgaggacgccact
gccgacgccgccggcgatcgccaagaccgcgaggcgccgcgtccgcaggacgcctga
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