Luteolibacter luteus: HHL09_15675
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Entry
HHL09_15675 CDS
T06562
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
luo
Luteolibacter luteus
Pathway
luo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
luo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HHL09_15675 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
luo03019
]
HHL09_15675 (rnr)
03016 Transfer RNA biogenesis [BR:
luo03016
]
HHL09_15675 (rnr)
Enzymes [BR:
luo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HHL09_15675 (rnr)
Messenger RNA biogenesis [BR:
luo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HHL09_15675 (rnr)
Transfer RNA biogenesis [BR:
luo03016
]
Prokaryotic type
tRNA degradation factors
HHL09_15675 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
RNase_II_C_S1
S1
OB_Dis3
HMMR_N
Motif
Other DBs
NCBI-ProteinID:
QJE97168
UniProt:
A0A858RL33
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All DBs
Position
complement(3793663..3796002)
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AA seq
779 aa
AA seq
DB search
MDRKELRGELLRLMGGKGYRPMNKSELSRELSLSTNDRPLLRGELAAMVKEGVIEEGKKG
RYETPKAKTGNHLRGTIRFLPRGHAWFYPDMADPGNLASGIDLKKYSRLHIPRRDTGTAL
EGDRVEVIFHLPRPARWRQGKRFSEEEEPDARGKVERVLERRSGRVVGVYKRKGKFGWVE
TEDPAMEGQIDVHGDTTAEPGQLVVVDLEQWEKHRTPRGRILEVLGWPGDAGVDIMAVIH
RQGLRTSFPEEVLRETRAVPEEVDPKEIARREDWRDRLVITIDPADAKDHDDAIWVEKHG
KGWTLAVHIADVSHYVKPRTALDKEASERGNSTYLVDRVLPMLPPELSNGICSLKPDVNR
LTKCAVIEISPTGKVSKTTFCDAVINSQAKLSYKQAQAILDGKPAPEGSVKGLEEMVREA
WKMAAILRKKRFADGALDLEMPEIRVKLDEKGKPVEVHQVEHTASHQLIEECMLIANEAV
ARLLKIKNKPTIYRVHEDPDFGKLHEYTETARAHGYQPGDLTNRAHIQKLLDSAKGRPDE
HLIKLGLLKSLKRAMYAADPLGHYGLAKGDYCHFTSPIRRYADLIVHRSLQAFLTNPPKQ
TDKVPGQNELAEFARHISDTERTSAEAENETKQLKMLEYLNLCSKMPEPPVFEGVVTDVR
MMGLLVEATDLGARGMIKREDLPRGEWRFEQSQMRFVSRSGLQFQLGQRIKMQVQRIDFQ
GKFIDFRIALEKGEAQPKVHGAPAKWEEKPAKKEKKRKFEKSWPPKGKSKDRKPGKKKR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaaaagaactgcggggcgagttgctccgcttgatgggcggcaagggttaccgc
ccgatgaataagtcggaactctcccgcgaactgtccctctccaccaatgaccgaccgcta
ctgcgcggggaactggcagcgatggtgaaggaaggggtgatcgaagaagggaaaaagggc
cggtatgagacgccgaaggcgaaaaccggcaaccatctgcgcggcaccatccgcttcctg
ccccggggacatgcgtggttttacccggacatggcggatcccggcaatctggcctcgggg
atcgacctgaagaagtactcgcgcttgcacattccccgtcgcgataccggcaccgcgctc
gaaggcgatcgcgtggaggtcatctttcacctcccccgtcccgcgcgctggcgtcagggc
aagcgtttctcggaagaagaggaaccggatgcgcgcggcaaggtggagcgcgtgctcgag
cgccgcagcggccgggtggtcggggtgtataagaggaaaggaaaattcggctgggtcgag
accgaggaccccgcaatggaaggccagatcgacgtgcacggcgatacgaccgcggagccg
ggacagctggtcgtggtggatctggagcagtgggagaagcatcgcaccccgcgcggcagg
atcttggaagtgctcggctggccgggcgacgcaggggtggacatcatggccgtgatccac
cgacagggtctgcgcacctcattcccggaggaagtgctacgggaaacgcgcgcggtgccg
gaggaggtcgatccgaaggagatcgcgcggcgcgaggattggcgggaccgtctggtcatc
acgatcgaccccgcggatgcgaaggaccacgacgatgcgatctgggtggagaagcatggc
aaggggtggaccctcgcggtgcacatcgcggacgtatctcactacgtgaaaccgaggacc
gcactcgacaaggaagcttcggagcgcgggaactcgacttatctggtcgatcgtgtgctg
ccgatgctgccgccggagttgagcaatgggatttgttcactgaagccggatgtgaaccgc
ctgacgaaatgcgcggtgatcgagatttccccaacgggcaaggtgagcaagacgaccttc
tgcgatgccgtgatcaattcacaggcgaagctttcctataagcaggctcaggcaatcctg
gatggcaagcccgctccggaaggctcggtgaagggcctcgaggagatggtgcgcgaggca
tggaagatggccgcgatcctgcgcaagaagcgcttcgccgatggcgccctggatctggag
atgccggagatccgcgtgaagctggatgaaaagggcaagccggtggaggtccaccaagtg
gaacacacggccagtcaccaattgatcgaggagtgcatgttgatcgcgaacgaagcggtc
gcgcgtctgctgaagatcaagaacaagccgaccatttatcgcgtccacgaggatccggat
ttcggaaagctgcacgaatataccgagaccgcacgggcgcatggatatcagcccggggac
ctgacgaaccgtgcccacattcaaaagctgctcgatagcgcgaaaggccgacccgatgag
catctgatcaagctggggctgctcaagagcctgaagcgcgcgatgtatgccgcggatccg
ctgggacactacggcttggcgaagggcgactactgccatttcaccagcccgatccggcgc
tatgcggatttgatcgtgcaccggtcactccaagccttcctcaccaatcctccgaaacag
acggacaaggttccggggcagaacgaactcgcagaattcgcgcgccacatctccgacacc
gagcggacctcggccgaagcggagaacgagacgaagcaactcaagatgctcgagtacctg
aacctctgctcgaagatgccggagcctccggtattcgagggcgtggtgacagacgtgcgt
atgatgggcttgctggtggaagcgaccgatcttggcgctcgcggcatgatcaagcgcgag
gatttgcctcgtggcgagtggcgcttcgagcaatcacagatgcgcttcgtttcgcgaagc
gggctgcagttccaactcggccaacggatcaagatgcaggtgcagcgcatcgacttccaa
gggaagttcatcgacttccgcatcgcgctggagaaaggcgaagctcagccgaaggttcac
ggcgctccggcgaagtgggaggagaagcctgccaagaaggagaagaagcggaagtttgaa
aagagctggccgccaaagggaaaaagcaaggatcgcaagccggggaagaagaagcggtaa
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