Luteolibacter sp. Populi: ABWK72_03245
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Entry
ABWK72_03245 CDS
T10555
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lup Luteolibacter sp. Populi
Pathway
lup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABWK72_03245 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lup03400
]
ABWK72_03245 (mfd)
Enzymes [BR:
lup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWK72_03245 (mfd)
DNA repair and recombination proteins [BR:
lup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABWK72_03245 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
XDA94405
LinkDB
All DBs
Position
852618..855791
Genome browser
AA seq
1057 aa
AA seq
DB search
MPRKVEAQDDWLQRAIGQPDFAQRLALAAPGAGSVVFDHADEASHAWVAAVVVKHLEKSK
QRRFWLICEAPRQRERLAVELEMWGVDAVDLPEAPVELEGGQLSDPEAAALRLEVLDGAA
KNEACIILCGSDAFSQAAPSPAALAGSRLTVKQGSNADPMDLAGKLAAHGYDRVTTVQGR
GQFAVRGGILDVFPWQGGRPLRIEFFDTEVESLREFDVDSQASVAKVERAELLLAEPELE
ATVAEYVRPGDVKIAFEDAEIEASVRIISGAPHIEGEEDFSTACFGSPLGSFEAGDFVLE
QNRRQRFFDQIDEWRAQDWKIGMTFSNKGEEERFVELAGQEQVVDLVRLRGELIQGFTVP
AARMAVLSSSELFGRYRTPGTLKRSRGEGQRVLTTRASLDDIAESDLVVHHEYGIGRFRG
IAPGETGEEISIEYRDGGLLAVPIDQAHLVAKYVGLGGKTPELNKLGGAAWKNIRKSAEK
SILDYAAQLLRVQAERQAEPGIPHPPDSRWMWEFENSFHYTETPDQRRAIEISKRDMEGV
KPMDRLICGDVGFGKTEVAIRAAFKAATGGMQVAILVPTTVLAEQHWRTFRERMSDYPIR
IDLLNRFRSPSEIRETIRGLADGSVDIVIGTHRLISGDVHFKNLGLAVVDEEQRFGVKHK
EKFKELFRSIDVMTLSATPIPRTLYMALMGARDMSTIDTPPPNRVPVHTSVVQYDERIIR
EAIQREMKRGGQVFFLHNRVKSIEMMQKKLKELVPEARILVGHGQMEKDDLEVVMRKFVH
GEADILLATTIIETGIDIPNANTILIDRADRFGLADLYQLRGRVGRAGEKAYAILLLPRD
FITAGDARKRIHAIKQYTALGSGFKIAMRDLEIRGAGNLLGTKQSGHIAAVGFDLYCQLL
RQSVDRLQGKTPKARVEASFRSDFVAFSEAEFARGSGDGPLLPAYLPNAWLGETQLRVSA
YRELAESMVEKDLNALEARWRDRFGRLPEAAANLIIVGRIRLTAAGKGVSSVEIKGQRLM
LQRGGDYIMLEGRRFPRLASEAAKEKLVEALEMLRAL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcaaggtggaagcccaggatgactggctgcagcgggccatcgggcagccggat
ttcgcgcagcgcctggcccttgcggccccgggtgcgggaagtgtcgtgttcgatcacgcg
gacgaggcatcgcacgcgtgggtcgcggcggtggtggtgaagcatttggagaagtcgaag
cagcgccgcttctggctgatctgcgaggccccgcggcagagggagcgactggcggtggag
ttggaaatgtggggcgtggatgccgtcgatttgccggaggccccggtggagttggagggc
ggccaattgtccgatcccgaggctgcggcgctgcggttggaggtgctggatggcgcagcg
aagaacgaggcctgcatcatcctctgcgggtcggatgccttttcccaagcagccccttcc
cccgcggcacttgcgggtagcaggctgaccgtcaagcagggttcgaacgccgatccgatg
gatcttgcgggcaagctggctgcgcatggctacgatcgcgtgacgacggtgcagggccgc
ggacaattcgcggtgcggggcgggattctcgatgtcttcccgtggcaaggcggacggccg
ctgcggatcgagttcttcgataccgaggtggaatcgctgcgcgagttcgacgtcgattcg
caggcctcggtggcgaaggtggagcgggcggagttgctgctcgcggagccggaattggaa
gcgacggtcgcggagtatgtgcggccgggcgatgtgaaaatcgccttcgaggacgcggag
atcgaagccagcgtgcggatcatcagcggcgcgcctcacatcgagggcgaggaagacttc
tcgaccgcttgtttcggcagtcccttgggcagcttcgaggcgggtgacttcgtgctcgaa
cagaaccgccgccagcgcttcttcgatcagatcgacgagtggcgcgcgcaggattggaag
atcggcatgaccttctctaacaagggcgaggaggagcgcttcgtcgaactggcggggcag
gaacaagtggtcgatctcgtgcgtttgcgcggcgagttgatccaaggcttcaccgtgccc
gcggcgcggatggcggtgctctcttcgagcgaactcttcggccgctatcgcacgcccggc
accctcaagcgaagccgcggcgaaggccagcgagtgctcaccacccgagcctcgctcgat
gacatcgcggagagcgatctggtggttcaccacgagtatggcatcggcagattccggggc
attgctccgggcgagacgggtgaggagatcagcattgagtatcgcgacggcggcttgctc
gccgtgccgatcgatcaggcgcacctggtggccaagtatgtcggcctcggcggcaagacg
ccggagctcaacaagctcggcggcgcggcgtggaagaacatccgcaagtccgctgagaaa
tcgatcctcgattacgccgcgcagttgctgcgggtgcaggccgagcgccaagccgagccc
ggcattccccaccctcccgattcgcgctggatgtgggagttcgaaaactccttccactac
accgagacgccggaccagcgccgcgccatcgagatctcgaagcgcgacatggagggcgtg
aagccgatggaccgcctgatctgcggggatgtcggtttcggcaaaaccgaggtggcgatc
cgcgcggctttcaaggcggccaccggtggcatgcaggtggcgatcctggtgccgaccacc
gtgctggcggagcagcattggcggaccttccgcgagcggatgagcgattacccgatccgc
atcgatctgctgaaccgcttccgcagcccatccgaaattagagagaccatccgcggtctg
gccgatggctcggtggacatcgtgatcggcacgcaccgcctgatctccggcgatgtgcat
ttcaagaatctcggcctcgctgtggtggacgaggagcagcgcttcggggtgaagcacaag
gagaagttcaaggagctcttccgcagcatcgacgtgatgacgctctccgccacgccgatc
ccgcgcacgctctacatggcactgatgggtgcgcgcgacatgtccaccatcgacaccccg
ccgccgaaccgggtgccggtgcataccagcgtggtgcagtatgacgagcggatcatccgc
gaggcgatccagcgcgagatgaagcgcggcggccaagtcttcttcctgcacaaccgggtg
aagagcatcgagatgatgcagaagaagctcaaggagctggtgccggaagcgcggatcctg
gtcggccacggccagatggagaaggacgacctcgaggtggtgatgcgcaagttcgtccat
ggtgaggcggacatcctgctggcgaccacgatcatcgagaccggcatcgacatcccgaat
gcgaacacgatcctgatcgaccgcgccgaccgcttcggcctggcggatctctatcagctc
cgcggccgcgtgggccgggccggcgagaaggcttacgcgatcctgctgctgccgcgcgac
ttcatcaccgccggcgatgcgcggaaacgcatccacgcgatcaagcagtacaccgcgctc
ggctccggcttcaagatcgccatgcgcgacctggagatccgcggcgcgggcaatctgtta
ggcacgaagcaaagcggtcacattgcggcggtcggcttcgatctttactgccagcttcta
cggcagtcggtggaccggcttcagggcaaaactccgaaggcccgggtcgaggcgagcttc
cgcagtgatttcgtggccttctcggaagcggaattcgctcgtggctcgggcgatggtccg
ctgctgcccgcttacttaccgaacgcttggctgggcgagacccagctccgcgtgagcgcc
taccgggaactcgccgagagcatggtcgaaaaggatctcaatgccttggaagcacgctgg
cgggatcgcttcgggcgtctcccggaagccgcggcgaacctgatcatcgtgggccgcatc
cgcctcaccgcggcgggcaagggcgtttcatccgtggagatcaagggccagcgcctgatg
ctccagcgtggtggcgattacatcatgctcgaaggccggcgtttcccgcggctagcctcc
gaggcggcgaaggagaagcttgtggaagcgctggagatgctccgggcgctctag
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