Luteolibacter sp. Populi: ABWK72_09300
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Entry
ABWK72_09300 CDS
T10555
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lup Luteolibacter sp. Populi
Pathway
lup02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lup00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABWK72_09300 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lup03021
]
ABWK72_09300 (rpoD)
Transcription machinery [BR:
lup03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABWK72_09300 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
XDA95571
LinkDB
All DBs
Position
2350601..2352655
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AA seq
684 aa
AA seq
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MSNKKAAAAKPKGSKPAPKAGSKPAPAKKAVPAKPAKAAKPAPKPAAKPAPAAKKPAPKA
VAPAKKPATAPVKAVKPTPAKDVKPAAKAAPAKPAEAPKKPAEAPKKPAEAPKKGAEASK
KGAAPEKDRKAESAVTPATEVSRADGDKPRIDTPEIQEKIRELIKLAKEQEYLTYDDINE
ILPNNLVEPADVEAIMERLRNMEFDIIDASEVDRYKDKKRDDADDDVDDTKDQKLDILDD
PVRMYLKQMGQVPLLTREQEVEISKRIEDAEIEVAKQLHLFGFTAECYLELADKLLKGKE
RFDRVILDKKIESRERYMKILPKQCEQLKNLHEENDDLFRQMTAKNPRGKKKLEETFQKN
LQSLHRIYTKFYFKQKVVEDFCEQVEDYQQKFWKYGRKVQSDPEDKEFVTKLREVQQRCW
HEVDTFDETNKQLRHWLKEALKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGL
MKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQ
EYGREPSPEEIAEEIHLPVERVRAVLKMAQQPISLQAPVGDSDDTSFGDFIEDKSADNPM
EEAGFSMLKDKIKDVLDTLTEREREVLEQRFGLKDGYSRTLEEVGRQFQVTRERIRQIEA
KALRKMRHPTRIRKLEGFIEIPGA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaagaaagccgccgccgccaaaccgaagggttccaagccagcaccgaaagcg
ggtagcaagcccgctcctgccaagaaggcggtgccagcgaaacccgcgaaggcggccaag
cccgcgccgaagccggccgcgaaaccggccccggcggccaaaaagcccgcgcccaaggcg
gtcgctcctgccaagaagcctgcgactgctcctgtcaaggcggtgaagcccaccccggcc
aaggatgtgaagccggcggcgaaggcagctcccgccaagccggccgaagcgccgaagaag
ccggccgaagcgccgaagaagccggccgaagcgccgaagaagggtgccgaggcttccaag
aaaggtgccgctccagagaaggacaggaaggccgaatccgcggtgacaccggcaaccgaa
gtttcccgcgcggacggcgacaagccgcggatcgatacgccggagatccaggagaagatc
cgcgagctgatcaagctggccaaggagcaggagtatctcacttacgacgacatcaacgaa
atcctgccgaacaacctggtcgagccggcggacgtggaggcgatcatggagcgcctccgc
aacatggagttcgacatcatcgatgcctccgaggtcgaccgctacaaggacaagaagcgc
gacgatgcggatgacgacgtcgacgacaccaaggaccagaagctcgatatcctggacgat
ccggtccggatgtacctcaagcagatgggccaggtgccgctgctgacccgcgagcaggaa
gtcgaaatttccaagcgcatcgaggatgccgaaatcgaagtggccaagcagttgcacctc
ttcggcttcaccgcggagtgctaccttgagctggccgacaagttgctcaagggcaaggag
cgcttcgaccgcgtgattctcgacaagaagatcgagagccgcgagcgctacatgaagatc
ctgccgaagcagtgcgagcagctcaagaacctgcacgaagagaacgacgatctcttccgc
cagatgacggcgaagaatccgcgcggcaagaagaagcttgaggagaccttccagaagaac
ctgcagagcctgcaccggatctacacgaagttctacttcaagcagaaggtcgtggaggac
ttctgcgagcaggtggaagactaccagcagaagttctggaagtatggccgcaaggtgcag
tccgatccggaggacaaggaattcgtgaccaagctgcgcgaggtgcagcagcgctgctgg
catgaggtcgacaccttcgacgagaccaacaagcagctccgccactggctcaaggaagcg
ctgaaggcgaagaccgagatggtcgaggccaacctgcgcctggtgatttcgatcgcgaag
aaatacaccaaccgcggcctgtccttcctcgacctgatccaggagggcaacatgggcctg
atgaaggcggtggagaaattcgaataccgccgcggctacaagttctcgacctacgccacc
tggtggatccgccaggccatcacccgctcgatcgccgaccaggcgcggaccatccgcatc
ccggtgcacatgatcgagacgatcaacaagctgatgcgggtgcagaagcaactggtgcag
gaatacggccgcgagccttccccggaagaaatcgcggaagagattcacttgcccgtcgag
cgtgtccgcgcggtgctcaagatggcccagcagccgatctcgctgcaggctccggtgggc
gattccgacgacacgtccttcggtgacttcatcgaggacaagtccgcggacaacccgatg
gaagaagcgggtttctcgatgttgaaggacaagatcaaggacgtcctcgacaccctcacc
gagcgcgagcgcgaggtgctggagcagcgcttcggcctgaaggacggttacagccgcacg
ctggaagaagtgggccgccagttccaagtcacccgcgagcgcatccgccagatcgaggcc
aaggccctccgcaagatgcgccaccccacgcgtatccggaagctcgagggcttcatcgag
atcccgggggcgtga
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