Luteolibacter sp. Populi: ABWK72_10340
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Entry
ABWK72_10340 CDS
T10555
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lup Luteolibacter sp. Populi
Brite
KEGG Orthology (KO) [BR:
lup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lup03016
]
ABWK72_10340
Enzymes [BR:
lup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABWK72_10340
Transfer RNA biogenesis [BR:
lup03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABWK72_10340
Prokaryotic type
tRNA splicing ligases
ABWK72_10340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
VCH_CASS14
Motif
Other DBs
NCBI-ProteinID:
XDA95770
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All DBs
Position
2599962..2601446
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AA seq
494 aa
AA seq
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MHTIHKTDEALGFLALPGDKGKPITVVGTDAIRDSFDATCLQQAINSRMAPGVTDLVLNP
DAHAGYGAPVGCVMISPTHIYPGPVGVDIKCSMSLLQLDIPEDAIKDKQTRRALIDAIIQ
RTPTGAGKGQRSVKKARHVDELIGVPAVTEGATRRVCEALGIPPEWAFRCEDSTHVGHDG
TYDALRSRLDWILAQGRIRNFVDKLGQLGSYGGGNHFGECEITRVTDRPWARETAKSFGL
RDGKVSFLSHCGSRGFGNLLAQGQFQDLENKFRTWGTPFPADDKQLVYAPLGTPEANAYI
DDMSLGANFATVNHLLINALVLEAFQEVLPGAKGQLVYFISHNIAREEIVDNRKSWVHRK
GATRAIPGGHFSLAGTPFEKTGHPILLPGNPRDGSVVMVARAGAERTAYSVNHGAGRCMG
RKHAARTLNQVAVDADFDHDDILSNCRKYPIDEAPDAYKSFPEVLRSVESAGLAETVASL
KARFVIKDETAADD
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccatccacaaaaccgacgaggccctgggcttcctagccctgcccggcgacaag
ggcaagccgatcaccgtggtcggaaccgacgcgatccgcgattccttcgacgcgacctgc
ctccagcaggcgatcaactcgcggatggccccgggagtgaccgatctggtcctgaatccc
gatgcccacgccggctacggcgcgccggtcggctgcgtgatgatctcgccgacgcatatc
tatccgggcccggtgggcgtggacatcaagtgctcgatgagcctgctccagctcgatatc
cccgaggatgcgatcaaggacaagcagacccggcgcgccttgatcgatgccatcatccag
cgcacgccgaccggtgccggcaagggccagcgctcggtaaagaaggcacggcatgtcgac
gaactcatcggcgtgcctgccgtcaccgagggcgcgacccgccgggtctgcgaggcactc
gggattccgcccgagtgggccttccgctgcgaggactccacgcatgtcggacacgatggg
acctacgatgcccttcgtagccgcttggactggatcctggcgcagggccgcatccgcaac
ttcgtggacaagctcgggcaactcgggtcctacggcggcggcaaccacttcggcgagtgc
gagatcacccgcgtgaccgaccgtccctgggcccgggagaccgcgaaatccttcgggctg
agggatggcaaggtctccttcctcagccactgcggatcgcgcggctttgggaacttgctc
gcgcagggccagttccaggacttggaaaataagttccgcacctggggaacccccttcccg
gccgatgacaagcagctcgtctacgcaccgctcggaactcccgaggcgaatgcctacatc
gacgacatgtcgctcggcgcgaacttcgcgaccgtgaatcacctcctgatcaatgcactg
gtgttagaggccttccaggaagtcctgccgggtgccaagggccagctcgtctacttcatc
tcgcacaatatcgcgcgggaagagatcgtcgacaaccggaagtcgtgggtccaccgcaag
ggcgcgacccgggcgatcccgggcggccacttctcgctggcgggaacgcccttcgagaag
accggccacccgatccttctgccgggaaatccgcgcgacggctcggtggtcatggtcgcc
cgtgccggggccgagcgcaccgcctactccgtgaatcacggcgcaggccgttgcatgggt
cgcaagcacgcggctcgcacgctcaaccaggtggccgtggatgccgacttcgaccacgac
gacatcctcagcaactgccgcaagtacccgatcgacgaagccccggacgcttacaaaagc
ttccccgaggttctgcgaagcgtggaaagcgccggcctggccgaaaccgtggcgagcctg
aaggcacgcttcgtgatcaaggacgaaacggcagccgatgactaa
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