Luteolibacter sp. Populi: ABWK72_14900
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Entry
ABWK72_14900 CDS
T10555
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lup Luteolibacter sp. Populi
Pathway
lup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWK72_14900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lup03019
]
ABWK72_14900
03009 Ribosome biogenesis [BR:
lup03009
]
ABWK72_14900
Enzymes [BR:
lup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWK72_14900
Messenger RNA biogenesis [BR:
lup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWK72_14900
Ribosome biogenesis [BR:
lup03009
]
Prokaryotic type
rRNA helicases
ABWK72_14900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
SelB_WHD3
STAT6_C
Motif
Other DBs
NCBI-ProteinID:
XDA91429
LinkDB
All DBs
Position
complement(3644578..3646308)
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AA seq
576 aa
AA seq
DB search
METPPFSELGLPPELLAAIETLGYERPSPIQAMAIPVALTGRDILGLSHTGSGKTAAFTL
PLLAKLDFKKKHPQALILCPTRELAVQVCEEVHRLGAKLGQLRAIPVYGGAPMDRQLRAL
RDGVQVVVGTPGRVMDHLRRGSFDVSKIETVVLDEADRMLDLGFREEMEELLAAIPKERQ
TMFFSATMSRGVTHLIGKFGNNAQTIEIDQKAKTVSTIEQSCYEVRERSKVEVLSRLLDM
EQARLAIIFCNTKRSVDECTEALLARGYTVDRLHGDITQQMRERVLKRFRDGTIELLVAT
DVAARGLDVENIDVVFNYDLPQDPEDYVHRIGRTGRAGRSGRAVSFVFGREIHRLEMIER
YTRHPIRRDRVPTQEMVEGRLADRFFDQIKERLEKGEFESHESQMDRLLEQGFTPTDIAG
VLITMLKENSGREFGEIAEDREVPGQRGRRDTREPRGDPRGDYRDRGPREPREFRERTPR
QDGPHDNADMVPLFFSLGKFHGVKVGEIIGMLYGEAGLPDGAVGHVKLFAKHSCIDVRKD
CADRLIQISKGANLRGRNFILDYDRGPKSAQQGGPE
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaccgcctttctccgaacttggcttgccgcccgagctgctcgccgccatcgaa
accctcggctacgaacgcccttcgccgatccaggcgatggcgatcccggtcgctctaaca
ggccgcgacatcctcggcctttcccacaccggctccggcaagacggcggctttcacgctg
ccgctgctggcgaagctggacttcaagaagaagcatccgcaggcgctgatcctctgtccg
acccgcgagctcgcggtgcaggtttgcgaggaagtccaccgcctcggcgcgaagctcggc
caactgcgtgcgatccccgtttacggcggtgcgccgatggaccgccagctccgtgcgctg
cgcgatggcgtgcaggtcgtggtgggaacgccgggccgggtgatggatcacctgcgccgc
ggatccttcgacgtcagcaagatcgaaacggtggtgctcgatgaagccgaccgcatgctc
gatctcggcttccgcgaggagatggaagagctgctcgccgcgatcccgaaggagcggcag
acgatgttcttctccgcgacgatgagccgcggcgtgacgcacttgatcgggaagttcggc
aacaacgcccagacgatcgagatcgaccagaaggccaagaccgtttcgacgatcgagcag
agctgctacgaagtgcgcgagcgctcgaaggtggaagtcctctcgcgcttgctcgacatg
gagcaggcccgcctcgcgatcattttctgcaataccaagcgctcggtggacgagtgcacc
gaggcgctgctggcccgcggctacacggtggaccgcctgcacggcgatatcacccagcag
atgcgcgagcgggtgctgaagcgtttccgcgacggcaccatcgagctgttggtggcgacg
gatgtcgcggcccgcggtctcgacgtggagaacatcgacgtggtcttcaactacgacctg
ccccaggatccggaagactacgttcaccgcatcggccgcaccggccgggccggacgcagc
ggtcgcgctgtcagcttcgtcttcggccgggagatccaccgcctggagatgatcgagcgc
tatacgcgccatccgatccggcgcgaccgggtgccgacgcaggagatggtggaaggccgc
ttggccgaccgcttcttcgatcaaatcaaggagcgtcttgagaagggcgaattcgaatcg
cacgagagccagatggaccgcttgctcgagcaaggcttcacgccgaccgacatcgccggc
gtgctgatcacgatgctcaaggaaaactccggccgcgaattcggagagatcgcggaagac
cgcgaggtgcccggccagcgtggccgtcgcgacacccgcgagccccgaggggatccgcgc
ggcgactaccgcgaccgcggcccacgcgagccgcgtgaattccgcgagcgcacgccgcgc
caggatggaccgcacgacaacgccgacatggtgccgctcttcttctcactcgggaaattc
catggcgtgaaggtcggcgagatcatcggcatgctctacggcgaagccggcctaccggac
ggcgccgtgggtcacgtgaagctcttcgccaagcacagctgcatcgacgtgcggaaggat
tgcgcggaccgcctgatccagatttcgaagggcgcgaacctgcgcggccggaacttcatc
ctcgattacgatcggggtccgaagagcgcgcagcagggcgggccggagtga
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