Luteimonas yindakuii: E5843_07320
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Entry
E5843_07320 CDS
T05957
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lus
Luteimonas yindakuii
Pathway
lus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5843_07320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lus03019
]
E5843_07320
03009 Ribosome biogenesis [BR:
lus03009
]
E5843_07320
Enzymes [BR:
lus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E5843_07320
Messenger RNA biogenesis [BR:
lus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5843_07320
Ribosome biogenesis [BR:
lus03009
]
Prokaryotic type
rRNA processing factors
E5843_07320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
QCO67632
LinkDB
All DBs
Position
complement(1481548..1484898)
Genome browser
AA seq
1116 aa
AA seq
DB search
MKRMLINATQAEELRVATVDGQTLYDIDIEQPSQEQRKSNIYKGRITRLEPSLEAAFVDY
GADRQGFLPLKEISRDYYQAGVDHRNAGIRELLREGQEVVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAALKEAMDKLNIPDEMGVIIRTAGVGRDAEELQ
WDLDYLLSIWKAICDAALSKPASFLIYQESRLITRALRDYMRADIGEILVDTPEMYEEAK
EFVEQVMPHNLRKLKHYTDDTPLFNRFQIESQIENAYERTIRLPSGGALVIDQTEALTAV
DVNSARATRGGDIEETAFHTNLEAADEVARQLRLRDLGGLVVIDFIDMSSSKHQREVENR
LQNALKYDRARVQLGRISKFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLS
IIRVAEEHAMKDNTGQVLVQAPVEIANYLLNEKRGALAEIEKRHTAPILIVADEQLHTPH
YEVTRIRENELGEETSKPSYQRGTPRKLATIALNKNNLNVPPPAVTNVRPTQPAPVREPR
EEAPAPVAVASPVAPVAAPVPAPAAGLVGWLKRLFASEPASPATGTRGNRPQQDRDDASG
DRNGRGGRRGDRRQGRDGGGGNGRRDERRGPKPAHGERNATQGGREARNTQAERPERGNK
GEKAAKGAQAAQQVAQQASAPAQQNAQQQKQPRPPKQPRPDGQQGGRKADLADAGTPRGQ
GEDKRRDDAAVVTTAAATDGLGRSIAAAPAEAIEASAVDTNVQLAADVAEAAATDATAAQ
DDSNGEGDGGSRRRRGRRGGRRRRRGNGEQAAAGEDGAMQDDNVASDGPTPAVDGSQPEF
DFDDMPAPVRERTAAPVQETTEDAEPAQRAAASVAVAAVAMTAAAAQEAPAVAATAQAET
TAAVEPPAPPAVPDRYRSNHDRGGPEVERQPEIAESPSPVEPPAPARAEPAQAEPVEVRS
VEDEAARREPARDRPTPVQDVPAPVQSAETVAAAQQESGVEAETSQDHSGETAVVNPTPA
DAAVNAADVASEPAVNPEQVPAAQASAVATVDPVMPGLFDASTADEPDALAATPAGVDAD
TEESTQVEAAGVDDDGSGHATSAQEAAANTAPTRDA
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgccacgcaggccgaagaactgcgcgtggccactgttgac
ggacagacgctctacgacatcgacatcgagcaaccgtcgcaggaacagcgcaagtccaat
atctacaagggccgcatcacccggctcgagccctcgctggaagccgccttcgtcgattac
ggcgccgaccgccagggcttcctgccgctgaaggaaatttcccgcgactactaccaggcg
ggcgtcgaccatcggaatgccggcatccgcgagctgttgcgcgagggccaggaagtcgtg
gtccaggtggagaaggaagagcgcggtaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgttacatggtgctgatgccgaactcgcccaccgccggcggcgtgtcgcgc
cgcatcgagggcgaggaccgcgccgcgcttaaagaggcgatggacaagctcaacatcccc
gacgagatgggggtgatcatccgcaccgccggcgtcggccgcgatgccgaggaactgcag
tgggacctcgactacctgctcagcatctggaaggcgatctgcgacgccgcgctgtcgaag
ccggcctcgttcctgatctaccaggaatcgcgcctgatcacccgcgcgctgcgtgactac
atgcgcgccgacatcggcgagatcctcgtcgacacgcctgagatgtatgaagaggcgaag
gaattcgtcgagcaggtgatgccgcacaacctgcgcaagctcaagcactacaccgacgac
accccgctgttcaaccgcttccagatcgaatcgcagatcgagaacgcctacgagcgcacc
atccgcctgccgtccggcggcgcgctggtgatcgaccagaccgaagcgctgaccgcggtc
gacgtgaactccgcgcgcgccacccgcggcggcgacatcgaggaaaccgcgttccacacc
aacctcgaggcagccgacgaagtcgcccgccagctgcgcctgcgcgacctcggcggcctg
gtggtgatcgacttcatcgacatgtcgtcctccaagcaccagcgcgaggtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgcgtgcagctgggccggatctccaagttc
ggcctgctggaaatgagccgccagcgcctgcgcgcaagcctgggcgagtcgagccagatc
gtctgcccgcgctgcgagggccacggccggatgcgcagcatcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggacaacaccggccaggtgctggtgcag
gcgccggtcgagatcgccaactacctgctcaacgagaagcgcggcgcgctggcggagatc
gagaagcgccacacggcgccgatcctgatcgtggccgacgagcagctgcacacgccgcat
tacgaagtcacccgcatccgcgagaacgagctcggcgaagagaccagcaagccaagctac
cagcgcggcacgccgcgcaagctggcaaccatcgcgctcaacaagaacaacctcaacgtg
ccgccgccagcggtcaccaacgtgcgtcccacgcagcccgcgccggtgcgcgagccgcgc
gaggaagcacctgcaccggtggccgtggcatcgcccgtggcgcctgtcgcggcaccggtg
cccgcgcctgccgcgggcctggtcggctggctgaagcgcctgttcgcgtccgagccggca
tcgccggccaccggcacccgcggcaatcgcccgcagcaggatcgtgacgacgcgtccggc
gaccgcaatggccgcggtggccggcgcggcgaccgccgtcagggccgtgacggtggcggt
ggcaacggacgtcgtgacgaacggcgcgggccgaagccggcgcatggcgaacgcaacgca
acacagggcggccgcgaggcgcgcaacacgcaggccgagcggcccgagcgcggcaacaag
ggcgaaaaggcggccaagggcgcacaggctgcacagcaggtcgcccagcaggcttccgca
ccggcgcagcagaatgcccagcagcagaagcagccgcggccgccaaagcagccgaggccg
gatggccagcagggtggacgcaaggccgacctcgccgacgcgggcactccgcgtggccag
ggcgaggacaagcgtcgtgacgatgcagcggtcgtgacgaccgctgccgcgacggacggg
ctcggcaggtccatcgcagcggccccggccgaagcgatcgaggcatccgctgtcgacacc
aatgtccagctcgcggcagatgtcgccgaggcagcggcgaccgatgccaccgcggcacag
gacgacagcaacggcgaaggcgatggtggcagccgtcgtcgtcgcggacgtcgcggcggt
cgtcgccgtcgtcgtggcaacggcgagcaggccgcggctggcgaggatggcgcgatgcag
gacgacaacgtcgcttccgacggccccacgccggcggtcgacggctcgcagcccgagttc
gatttcgatgacatgccggcgcccgttcgcgagcgcaccgccgcgcctgtgcaggagacc
accgaagacgcggaacccgcacaacgtgcagcggccagcgtcgccgtcgcagcggtggcg
atgaccgcggccgccgcacaggaagcaccggcggtggcagccactgcccaggcagagacg
acggcagctgtcgagccgccggcacctcccgccgtgccggaccgctacaggtcgaaccat
gaccgcggtggccccgaagtggagcggcagccggagatcgccgagtcgccgtccccggtc
gagccgccggcacctgcccgggccgagcccgcccaggcagaaccagtcgaagtccggtct
gtagaggacgaagccgcgcggcgcgagcccgcacgggacaggcccacgccggtgcaggac
gtaccggcgccggtccagtccgcggaaaccgtcgccgccgcgcagcaggagtcgggcgtc
gaggccgaaacgtcgcaggatcattccggggagaccgccgtcgtcaacccgacgccggca
gatgcggcggtgaatgcagctgacgtcgcgtccgagccagcggttaatccggagcaggtg
ccggcagcgcaggcttcggcagtcgccacggtcgatccggtcatgccgggcctgttcgat
gcgagcaccgcggatgagccggatgcgctggccgcgacgcctgccggggtcgacgctgac
accgaagagtccacgcaggtcgaagctgcgggtgtcgatgacgacggcagcgggcacgcc
acgtctgcgcaggaggcggcggccaacaccgcaccaacgcgcgacgcctga
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