Luteimonas yindakuii: E5843_10060
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Entry
E5843_10060 CDS
T05957
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lus
Luteimonas yindakuii
Pathway
lus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E5843_10060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lus03400
]
E5843_10060
Enzymes [BR:
lus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5843_10060
DNA repair and recombination proteins [BR:
lus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E5843_10060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QCU72649
LinkDB
All DBs
Position
2080885..2084388
Genome browser
AA seq
1167 aa
AA seq
DB search
MKAPDLPLPPLPRRGQQRAFWRAPASTSALAWTLLRAATAHGRPLLVVARDNHHAHQLES
DLQTLAGGDDVPLLAFPDWETLPYDHFSPHPEIVSQRLATLNRLPQLKRGLVVVPVQTLM
QRLPPLSWIAGQTFDMRVGQRLDLDAEKRRLESAGYRNVPQVLDPGDFAVRGGLLDVFPM
GADAPFRVELFDEDIESIRSFDPESQRSLDKVEAIRMLPGREVPLDEAARERAMDALGER
FDIDQRRSSLFQDLKSGLSPAGVEYYLPLFFEPPRGRFGERDAGDATATLFDYLPEGALP
VLAPGALAAADHAWAHIGERYEQRRHDIERPLLPPAELWLPPDTLRECLNRGERVDVADA
SHAQAAQAVALGDQPAPDLPISTRDADATGALKSFLGHYPGRVLLAADSAGRREALIDLL
APTGLKPQVLHDFAAFIAADTDARFAVAVAPLDNGFALDAPQVTILTERQLFPERATQPR
RARRAGREPEAIIRDLGELTGGAPIVHEDHGVGRYRGLVVLEAGGQPAEYLEIEYAKGDR
LYVPVAQLHLINRYSGASPETAPLHSLGGEAWTKAKKRAAEKVRDVAAELLEIQAKRAAR
AGLAIDIDRAMYEPFAAAFPFEETPDQHSAIEAVIHDLASSQPMDRVVCGDVGFGKTEVA
VRAAFVAAAGGKQVAVLVPTTLLAEQHFRNFSDRFADSPIRVEVLSRFKSTKEIKAELEK
VARGEIDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATP
IPRTLNMAMAGIRDLSIIATPPAHRLAVQTFVSEWDDSLLREAFQRELARGGQLYFLHND
VESIGRMQRELQELVPEARIGIAHGQMPERELEKVMVDFQKQRFNVLLSTTIIESGIDIP
NANTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDKRAITPDAQKRLDAIASMDE
LGAGFTLATHDLEIRGAGELLGEEQSGQMAEVGFSLYTELLERAVRSIRQGKLPDADEPD
SRGAEVELHVPALIPDDYLPDVHTRLTLYKRISAANDADGLRELQVEMIDRFGLLPDPAK
HLFAIAELKLQATGLGVRKLDLGENGGRLLFEAKPRIDPMALIQLIQKQPKLYAMDGPEK
LRIKLPLPEAADRFNAARGLMMQLAQG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcacccgaccttccccttccgccgctgccccggcgcggccagcagcgtgcgttc
tggcgcgcgcccgcctccacctccgcactggcctggacgctgttgcgcgccgccaccgcg
catggccggccgttgctggtcgtcgcgcgcgacaaccaccatgcccaccagctggaatcg
gacctgcagacgctggccggcggcgacgacgtgccgttgctggcattccccgattgggaa
accctgccctacgaccacttcagcccgcatccggagatcgtctcgcagcggctggccacg
ctgaaccgcctgccgcagctcaagcgcggcctggtggtggtgccggtgcagacgctgatg
cagcgcctgccgccgctgtcgtggatcgccggccagaccttcgacatgcgggtcggccag
cggctcgacctcgatgccgagaagcggcgactcgaatccgctggctaccgcaacgtgccg
caggtgctcgacccgggcgacttcgccgtgcgcggcggcctgctcgacgtgttcccgatg
ggcgccgacgcgccgttccgcgtcgaactgttcgacgaggacatcgaatcgatccgcagc
ttcgatccggaatcgcagcgctcgctcgacaaggtcgaggcgatccgcatgctgcccggc
cgcgaggtgccgctggacgaggccgcgcgcgaacgcgcgatggatgcgcttggcgaacgc
ttcgatatcgaccagcgccgcagctcgctgttccaggacctgaagtccgggctgtcgccg
gctggcgtcgagtactacctgccgctgttcttcgagccgccgcgcggccgcttcggcgag
cgcgatgccggcgacgccaccgcgacgctgttcgactacctgcccgagggcgcactgccg
gtgcttgcccccggcgcactggccgccgccgaccacgcgtgggcacacatcggcgagcgc
tacgaacagcgccgccatgacatcgagcgcccgctgctgccgccggccgagctgtggctg
ccgccggacacgctgcgcgaatgcctcaaccgcggcgagcgcgtcgacgtcgccgatgcc
agccacgcgcaggcggcgcaggccgtggcgctgggcgaccagccggcgccggacctgccg
atctccacgcgcgatgcggatgccaccggcgcgctgaagtccttcctcggccattacccc
ggccgcgtgctgctggccgccgacagcgccggccgccgcgaggccttgatcgacctgctc
gcgccgaccggcctcaagccgcaggtgctgcacgacttcgccgccttcatcgccgccgat
accgacgcgcgcttcgcggtcgccgtcgccccgctcgacaacggcttcgcgctggatgcg
ccgcaggtcacgatcctcaccgagcgccagctgtttccggagcgcgccacccagccgcgc
cgggcgcgccgtgccggccgcgagccggaagcgatcatccgcgacctcggcgaactcacc
gggggtgcgccgatcgtccacgaggaccacggcgtcggccgctaccgcggacttgtcgtg
ctcgaagccggcggccagccggccgagtacctcgagatcgaatacgccaagggcgaccgc
ctgtacgtgccggtcgcgcagctgcacctgatcaaccgctactccggcgcatcgccggaa
accgcgccgctgcattcgctcggtggcgaggcgtggaccaaggccaagaaacgcgccgcc
gagaaggtgcgcgacgtcgccgcggaacttcttgagatccaggccaagcgcgccgcgcgt
gccggccttgcgatcgacatcgaccgcgcgatgtacgaaccgttcgccgcagcgttcccg
ttcgaggaaacgcccgaccagcattcggcgatcgaggcggtcatccacgatcttgcatcg
agccagccgatggaccgcgtggtctgcggtgacgtcggtttcggcaagaccgaggtcgcg
gtgcgcgcggccttcgtcgccgcggccggcggcaagcaggtggcggtgctggtgcccacg
acgctgctggccgaacagcatttccgcaacttcagcgatcgcttcgccgactccccgatc
cgcgtcgaggtgctgtcgcgcttcaagagcacgaaggaaatcaaggccgagctggaaaag
gtcgcccgcggcgagatcgacgtgatcgtcggcacccatcgcctgctgcagcctgacgtg
aagttcaaggatctcggactggtcatcgtcgacgaggaacagcgtttcggcgtgcgccag
aaggaagcgcttaaggcgctgcgcgccaacgtgcacctgctcacgctcaccgccacgccg
atcccgcgcacgctcaacatggcgatggccggcatccgcgacctctcgatcatcgccacc
ccgcccgcgcaccggctggcggtgcagaccttcgtcagcgaatgggacgactcgctgctg
cgcgaggccttccagcgcgagctcgcgcgtggtggccagctgtacttcctgcacaacgat
gtcgaatcgatcggccgcatgcagcgcgagctgcaggagctggtgccggaggcgcgcatc
ggcatcgcccacgggcagatgccggagcgcgagctggaaaaggtgatggtcgacttccag
aagcagcgcttcaacgtgctgctgtcgacgacgatcatcgaatccggtatcgacatcccc
aacgccaacaccatcgtcatcaaccgcgccgaccgcttcggcctcgcccagctgcaccag
ctgcgtggtcgcgtcggccgttcgcaccaccgcgcgtatgcgtacctggtggtgccggac
aagcgcgcgatcacccccgatgcgcagaagcgcctggatgcgatcgcgtcgatggacgaa
ctcggcgccggcttcaccctcgccacccacgacctcgagatccgcggcgccggcgagctg
ctgggcgaggagcagagcgggcagatggccgaggtcggcttcagcctctacaccgaactg
ctggaacgcgcggtgcgctcgatccgccagggcaagctgcccgacgccgacgaaccggat
tcgcgcggtgccgaggtcgaactgcacgtgccggcgctgatcccggacgactacctgccc
gacgtgcacacccggctgacgctgtacaagcgcatcagcgccgccaacgatgccgacggc
ctgcgcgagctgcaggtggagatgatcgaccgcttcggcctgctgcccgacccggccaag
cacctgttcgcgatcgccgagctgaagctgcaggccaccgggctgggcgtgcgcaagctc
gaccttggcgagaacggcgggcgcctgctgttcgaggccaagccacgcatcgacccgatg
gcactgatccagctgatccagaagcagccgaagctgtacgcgatggacggcccggagaag
ctgcgcatcaagctgccgctgccggaagccgccgaccgcttcaacgccgcgcgcgggctg
atgatgcagctggcgcaggggtga
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