Luteimonas yindakuii: E5843_10295
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Entry
E5843_10295 CDS
T05957
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lus
Luteimonas yindakuii
Brite
KEGG Orthology (KO) [BR:
lus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lus03009
]
E5843_10295 (rlmD)
Enzymes [BR:
lus01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E5843_10295 (rlmD)
Ribosome biogenesis [BR:
lus03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E5843_10295 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Methyltr_RsmB-F
Cons_hypoth95
PCMT
Methyltransf_11
TRAM
TRM5-TYW2_MTfase
Methyltransf_12
Methyltransf_23
Methyltransf_15
CMAS
PrmA
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
QCU72656
LinkDB
All DBs
Position
complement(2129465..2130892)
Genome browser
AA seq
475 aa
AA seq
DB search
MGASALAGAAKADPGTFAGATPCGVCDNGALPPHHFRDVARLDQTPFQLDILDLGHDGRG
VARRADGKPVSVTGALPGERVLVRQTARSRSLDEAVTLDVERASPDRVQPRCPHFGVCSG
CVLQHLEESKQILAKQRVLLENFERIGHVVPEQVLPPLTDRQWGYRRKGRFSVRRVEKKG
RTLVGFRELDPRFVADLSICYTAIPAIGERVAALSALVDAMDGRREIPQIEFIAGDDTVA
LVFRHLAPLSPADRERLQAFAQDHGFAIFLQPGGIDSVHALWPGDPPLSFRLPQWDVELK
FRPLDFIQVNKGLNGKMIALALELLDTRPGERVLDLFCGLGNFTLPLARGNAEVIGVEGD
AGLVARARGNAALNGLANAEFHAADLTQPLDGKPWAGQGFDRLLLDPPRSGADAVLRQLS
LKGLKRIVYVSCHPGSLARDADYLVNERGWKLRAAGVMDMFPHTAHVESIALFEP
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atcggcgccagcgcgctcgcgggcgcagcgaaagccgaccccggcacgttcgccggggcg
acgccctgcggggtctgcgacaatggcgcgcttcccccgcaccatttccgcgacgtggct
cgactcgaccagaccccgttccagctcgacatcctcgacctcggccatgacggccgcggc
gttgcccgccgcgctgacggcaagcccgtgtccgtcaccggtgcgttgccgggcgaacgc
gtgctggtgcgccagacggcgcgctcgcgcagcctcgacgaggcggtcacgctggatgtc
gagcgcgcatcgcccgatcgcgtgcagccgcgctgcccgcatttcggcgtgtgcagcggc
tgtgtgctgcagcacctggaggagtcgaagcagatcctcgccaagcagcgcgtgctgctg
gagaacttcgaacgcatcggccacgtcgtgccggagcaggtgctgccgccgctgaccgac
cgccagtggggttaccgccgcaagggccggttctcggtgcgccgggtggagaaaaagggc
aggaccctggtcggcttccgcgagctcgacccgcgtttcgtcgccgacctgtcgatctgc
tacaccgcgatcccggccatcggcgagcgtgtcgcggcgctgtcggcactggtcgatgcg
atggacgggcgccgcgagatcccgcagatcgaattcatcgccggcgacgacaccgtggca
ctggtgttccgccatctcgcgccgctgtcgcccgccgaccgcgagcgcctgcaggccttc
gcgcaggaccacggcttcgcgatcttcctgcagcccggcggcatcgattcggtgcacgcg
ttgtggcccggggatccgccgctgtcgttccgcctgccgcagtgggatgtggagctgaag
ttccgaccgctcgacttcatccaggtcaacaagggcctcaacgggaagatgatcgcgctc
gctctggagctgctcgacacgcggccgggtgagcgcgtgctcgacctgttctgcgggctg
ggcaacttcaccctgccactcgcgcgaggcaacgcggaggtgatcggcgtcgagggtgat
gccggcctggtggcgcgtgcgcgcgggaacgccgcgctcaatggcctcgcgaatgcggaa
ttccatgccgccgatctcacccagcccctcgacggcaagccgtgggcgggtcagggcttc
gatcgcctgctgctggatccgccgcgctccggtgccgatgccgtgctcaggcaactgtcg
ttgaagggcctcaagcgcatcgtctatgtgagttgccatccgggctcgctggcacgcgat
gccgactatctcgtcaacgaacgcggctggaaactgcgtgcggcaggggtgatggacatg
ttcccgcataccgcgcacgtggaatccatcgcgctgttcgaaccctga
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