Luteimonas yindakuii: E5843_11450
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Entry
E5843_11450 CDS
T05957
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lus
Luteimonas yindakuii
Pathway
lus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5843_11450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lus03021
]
E5843_11450 (rpoC)
03400 DNA repair and recombination proteins [BR:
lus03400
]
E5843_11450 (rpoC)
Enzymes [BR:
lus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5843_11450 (rpoC)
Transcription machinery [BR:
lus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5843_11450 (rpoC)
DNA repair and recombination proteins [BR:
lus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5843_11450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QCO68224
LinkDB
All DBs
Position
complement(2351931..2356175)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKDLLNLFNQQRPALDFDAIKIALASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAS
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPLERGQLLNEEQFLQMRQEHGDDFDAAM
GAEAVYDLLRTIDLQAEMVKLKEDIASTGSETKLKRLTKRIKLVEAFVESGNRPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFSKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKAGEGMAFANVAEVKRAYDNR
VVELHAKVKVRIAETVIDEEGNREKRTSIVDTTVGRALLAEILPDGLPFALANTELSKKN
ISRLINSCYRQLGLKDTVVFADKLMYTGFAFATRAGVSIGIDDMTIPAEKKDILAEAETE
VLEIQQQYQSGLVTAGERYNKVVDIWSRTNERVAKAMMDTIGTETVTNAEGVAVEQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTQAGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVSRLEDGGVQTINVRSTITCESPFGVCAMCY
GRDLGRGHLVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGSIK
FNNLKHVRHASGHFVAVSRSGELSVLDPHGRERERYKLPYGATIGVEDGAEIKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGSAAKDLRPIVR
IVDGKGNDLNIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAERSGIVSFGKDTKGKQRLILKGPDGEEHEELIPKYRQIIVFE
GEHVEKGETVVDGEPSPQDILRLKGVEELASYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEITDAGDSRYLVGEQVEKQRAIEDNAKLAKRNELTSKYEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDGLRGLKENVIVGRLIPAGTGLAYHTQRRRDASGLTESE
MEALSGSVTSDVEPAASQVREDVAEVAPEAGQGE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccttctgaacctgttcaaccagcagcgccccgcgctcgatttcgacgcgatc
aagatcgcgctggcatcgccggacatgatccgttcgtggtcctacggcgaagtgaagaag
cccgagaccatcaactaccgcaccttcaagcccgagcgtgacggcctgttctgcgcgtcc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgcgagaagtgcggcacggaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgacctcgccagcccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcattggcctgatgctggacatgacgctgcgtgacatcgagcgcatcctctat
ttcgaggcgttcgtggtcaccgagccgggcctgaccccgctcgagcgcggccagctgctc
aacgaagagcagttcctgcagatgcgccaggagcacggcgacgacttcgacgccgcgatg
ggcgccgaggccgtgtacgacctgctgcgcacgatcgacctgcaggccgagatggtgaag
ctcaaggaagacatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctggtggaggcgttcgtcgagtccggcaaccgtcccgagtggatgatcatgacg
gtgctgccggtgcttccgccggacctgcgtccgctggtgccgctggacggtggccgcttc
gccacgtcggacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactcaacgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatcggtcgatgcgttgatggacaacggccgccgtggccgcgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccgtttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgctggaactgttcaagcccttc
atcttctccaagctgcagcgccgtggcctcgccacgacgatcaaggccgccaagaagctg
gtcgagcgcgaagaggcggaagtctgggacatcctggaagaagtcatccgcgagcacccg
gtgctgctcaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccggcgaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctcggcctgtactacatgacccgcgcgctggagaacaag
gcgggcgaaggcatggcgttcgccaacgtcgccgaggtcaagcgcgcctacgacaaccgc
gtcgtcgagctgcacgccaaggtcaaggtccgcatcgccgagaccgtgatcgacgaggaa
ggcaaccgcgagaagcgcacgtcgatcgtggacaccacggtgggccgcgcgctgctggcc
gagatcctgccggacggcctgccgttcgcgctggccaacaccgagctcagcaagaagaac
atctcgcggctgatcaactcctgctaccgccagctgggcctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcgttcgcaacgcgcgccggcgtgtcgatcggc
atcgacgacatgaccatcccggccgagaagaaggacatcctggccgaggccgaaaccgag
gtgctggagatccagcagcagtaccagtccggcctggtcactgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcgtcgccaaggcgatgatggacacg
atcggtaccgagaccgtcaccaatgccgagggcgtcgccgtcgagcagaagtcgatgaac
tcgatctacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgccagctg
gccggtatgcgtggcctgatggccaagcccgacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgagggcctgaacgtcctgcagtacttcatctcgacccacggtgcccga
aagggtctcgcggataccgcgctgaagactgccaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgagaccgactgcggcacgcaggccggcctc
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgcgcgaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacacgcttctcgacgagcagtgggtgagccgtctcgaggatggcggcgtgcagacg
atcaacgtccgctcgaccatcacctgcgaaagcccgttcggcgtgtgcgccatgtgctac
ggccgtgacctcggccgcggccacctggtcaaccacggcgaggcggtcggcgtggtcgcc
gcgcagtcgatcggcgagccgggtacccagctcaccatgcggacgttccacatcggtggc
gcggcatcgcgtgcggccgccatcgacaacgtgacggtcaagaccaccggctcgatcaag
ttcaacaatctcaagcacgtgcgccatgccagcggccatttcgttgcggtgtcgcgttcg
ggcgagctgtcggtgctcgatccgcacggccgcgagcgcgagcgttacaagctgccgtac
ggcgccaccatcggtgtcgaggacggtgcggagatcaaggccggccagaccgtggccaac
tgggatccgcataaccatccgatcgtgtcggaagttgccggcttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggcctggcgtcgcgc
gagatcaccgatccgaaacgtcgtggctcggccgccaaggacctgcgcccgatcgtgcgc
atcgtcgacggcaagggcaacgacctcaacatcccgggtaccgacctgccggcgcagtac
ctgctgccgccgcgttcgatcgtcaacctgcaggatggcgcggccgtgggcgtgggcgac
gtggtggccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaggcacgcaagccgaaggacccggcggtgctggccgagcgt
tcgggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcctcaagggt
ccggacggcgaggagcacgaggagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgaagggcgtggaggagctggcctcgtacctgaccaaggaaatccaggacgtc
taccggctgcagggcgtcaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgagatcaccgacgccggcgacagccgctacctggtcggcgagcaggtg
gagaagcagcgcgccatcgaggacaacgccaagctggccaagcgcaacgagctcacctcc
aagtacgagccggtgctgctgggcattaccaaggcctcgctggcgaccgagtcgttcatc
tcggcggcctcgttccaggagaccacccgcgtgctgaccgaggctgccgtgcgcggcacc
cgcgacggcctgcgtggcctgaaggagaacgtcatcgtcggccgcctgattccggcgggt
accggcctggcgtaccacacccagcgccgtcgcgacgcctcgggcctcaccgagtcggag
atggaagcgctgtcgggcagcgtcacgtcagatgtggagccggccgccagccaggtccgc
gaggacgtggcggaggtcgcgccggaggccggccagggcgagtaa
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