Luteimonas yindakuii: E5843_12080
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Entry
E5843_12080 CDS
T05957
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lus
Luteimonas yindakuii
Brite
KEGG Orthology (KO) [BR:
lus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lus03019
]
E5843_12080 (hrpA)
Enzymes [BR:
lus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E5843_12080 (hrpA)
Messenger RNA biogenesis [BR:
lus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E5843_12080 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
SRP54
T2SSE
NACHT
ABC_tran
PhoH
AAA_23
Myosin_head
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QCU72706
LinkDB
All DBs
Position
complement(2481181..2485272)
Genome browser
AA seq
1363 aa
AA seq
DB search
MQAPNQPRRPRTPGRPDPALQAARAAIDGALSSDRGRLHGLWSRWRARAADEAARQAFER
ALAASIAIREARAAALPRAEVDPSLPIAGEAARIVELIRNHQVVVIAGETGSGKTTQLPK
LCLQAGRGAAGMIGCTQPRRIAARTVARRVAEELQVPLGGAVGFQVRFNDQVGERTAVKF
MTDGILLAEIASDRWLSAYDTIIVDEAHERSLNIDFLIGYLRQLLERRRDLKVIVTSATI
DTERFSKHFGDAPVVSVEGRGYPVDVRWRPLGERVETADEPPATAGSARRPRDEDSADTV
SVLDGIVAACDEIMRERGTGDVLVFLPGEREIRDAHQALERRKYRHTEVLPLYARLSTRD
QDRVFNPGPLRRIVLATNVAETSLTVPRIHYVVDPGFARVKRYSPRQKLDRLHIEPVSQA
AADQRKGRCGRIAPGTCVRLYSEADFLSRPQYTDPEIRRAALAGVILRMLWLGLGGIGNR
DPASPERAVGNSRVIEDFPFLEAPDPRAVADGWQQLAELGAVDGERRLTATGRTMARLPV
DVKLARMLVAAQAHGCLEPMLAIAAFLGIQDPRERPADQRAAADNAHALFADPRSEFVGI
LKLWEAYRAAHEDLTQSQLRRWAEKHFLGFLRLREWRELHRQLKLQCADIGWAVEQGRAP
LRDTVAGGDPAPVLDARGYAALHRALLAGLPTQLGHRGDRGQYEGPRGRRFQLFPGSALA
RKPPPWVLSATLLDTEKVWALTNATVEPDWAIAELPHLLARRHHDPHWSRSQGRVIGSEQ
VSLFGLVLAPKRPVDYGRLYPDEARAMFLRDGLVTGEINLRAPFLARNLATLAQAREEEA
KQRRVGLVVDESWMQQWYHDRIPAGIVDARSLDAWWKKASSAERDALAWTRDDLLVADET
DADRFPKVLAVGNARLEVSYRFEPGAVDDGMTVRVPLHLLNALDPARLSWLAPGFVEDRA
AALIRGLPKTLRRNFVPVPDFARAFAEAHRQPDADAFTGVLARFLKRLTGVELAATDFNE
GALEPHLRMNLRLLARDGRQVLAESRDLDALRTRFGADADAAFAERAAEGLAQAGLTTFP
DTPVPLSVPGAGGITAYPALDDAGNSARLAVYADAGEAARRHPGGVRRLLRIALDARLRQ
ARKQLTVKPKTALLYAAIEAAAPRATRPEGGDPLRDDLVEGAFTALTADGLGGIRDAAAF
ATRRDAVGRELFGEAMRRLHLAERVLDSVAEIRGRLEGGLMGWARANLDDMRAHLDSLAP
PGFLSITPDALLDQMPRYLQALSLRAERALRDPLRDQQRMLELKPFVEALVEAEADGIAH
DPDWRAFRQDLEELRVSLHAQELGARGGVSPKKLARRLEALLG
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagcacccaaccagccccgtcgtccccgcacgcccggccgtccggatcccgccctg
caggcggcgcgggcggcgatcgatggtgctctgtccagcgatcgggggcgcctgcacggc
ctgtggtcgcgctggcgcgcgcgcgcggccgatgaagcggcgcggcaggcgttcgagcgg
gcgcttgcggcgtccatcgccatacgcgaggcccgcgcggcggcgctgccgcgtgccgag
gtggacccgtcgctgccgatcgccggtgaggcggcgcgcatcgtcgagctgatccgcaac
caccaggtggtggtgatcgccggcgaaaccggatccggcaagaccacccagctgcccaag
ctgtgcctgcaggccgggcgcggcgccgccggcatgatcggctgcacgcagccgcggcgg
atcgccgcccgcacggtggcgcgccgggtggccgaggaactgcaggtgccgctggggggc
gcggtcggcttccaggtccgcttcaacgaccaggtcggcgagcgcaccgcggtgaagttc
atgaccgacggcatcctgctggcggagatcgcttccgatcgctggctgtcggcctacgac
acgatcatcgtcgacgaggcgcacgagcgcagcctcaacatcgacttcctgatcggctat
ctcaggcagctgctcgagcggcggcgcgacctcaaggtgatcgtgacgtcggccacgatc
gacaccgagcggttctcgaaacacttcggcgacgcgccggtggtcagcgtggaagggcgc
ggctatccggtcgacgtgcgctggcggccgctgggtgagcgtgtggaaaccgcggacgag
ccgcctgcgacggcggggtccgcgcgccgcccgcgcgacgaggacagcgccgacaccgtc
tccgtgctcgacggcatcgtggccgcctgcgacgagatcatgcgcgaacgcggcactggc
gacgtgctggtgttcctgcccggcgagcgcgagatccgcgacgcccaccaggcgctggag
cggcgcaagtaccggcacaccgaagtgctgccgttgtacgcgcggctgtcgacgcgcgac
caggaccgggtgttcaaccccggcccgctgcggcgcatcgtgctggccaccaacgtcgcc
gaaacctcgctgaccgtgccgcgcatccactacgtggtcgatcccggcttcgcccgggtc
aagcgctacagtccgcggcagaagctcgaccgcctgcatatcgaaccggtgtcgcaggcc
gcggccgaccagcgcaagggccgctgcgggcgcatcgcgccgggcacctgcgtgcggctg
tattcggaggccgacttcctctcgcgaccgcagtacaccgatcccgagatccgccgcgcc
gcgctcgccggggtgatcctgcgcatgctgtggctgggcctgggcgggatcgggaaccgt
gatccggcgtcgccggaacgcgccgtcggcaacagccgcgtcatcgaggatttcccgttc
ctggaggccccggacccgcgtgcggtcgccgacggctggcagcagctggccgaactcggc
gcggtggacggcgagcgcaggttgaccgcgaccggccgcaccatggcgcggctgccggtg
gacgtgaagctcgcgcgcatgctggtggccgcgcaggcgcatggctgcctggagccgatg
ctggcgatcgccgcgttcctcggcatccaggacccgcgcgagcgcccggccgaccagcgc
gccgccgccgacaatgcgcatgcgctgttcgccgatccgcgctcggagttcgtcggcatc
ctgaaactgtgggaagcctatcgcgccgcgcacgaggacctcacccagtcgcagctgcgg
cgctgggcggagaagcacttcctcggcttcctgcgcctgcgcgaatggcgcgagctgcac
cggcaactgaagctgcaatgcgccgacatcggctgggcggtggagcaggggcgagcgccg
ttgcgcgacaccgtcgccggtggggatcccgcgcccgttctcgacgcccgcggctacgcg
gcgctgcatcgtgcgctgctggccggcctgccgacccagctcggccaccgcggcgaccgt
ggccagtacgaaggcccgcgcgggcgtcgcttccagctgtttccgggatcggcattggcg
cgcaagccgccgccgtgggtgctgtcggcgacgctgctcgataccgaaaaggtgtgggcg
ctgaccaacgccacggtagagcctgactgggcgatcgccgaactgccgcatctgctggcg
cgtcgccaccacgatccgcactggtcgcgatcgcagggacgggtgatcggcagcgagcag
gtcagcctgttcggcctggtgctggcgccgaagcgcccggtcgattacggacggctgtat
cccgatgaagcacgggccatgttcctgcgcgatggcctggtgaccggcgagatcaacctg
cgtgcgccgtttcttgcccgcaacctggccacgctggcgcaggcgcgcgaggaggaggcc
aagcagcgccgtgtcgggctggtggtcgacgaatcatggatgcagcagtggtatcacgac
cgcattccggccggcatcgtcgatgcgcgttcactcgatgcctggtggaagaaggcatcg
tccgccgagcgcgatgcgcttgcgtggacgcgcgacgacctgctggtcgccgacgagacc
gatgccgaccgcttccccaaggtgctggcggtgggcaacgcacgcttggaggtgagctac
cgcttcgagcccggtgcggtggacgacggcatgaccgtgcgcgtgccgctgcacctgttg
aacgcgctggatccggcgcggctgtcgtggctggcgccgggctttgtcgaggaccgggcg
gcggcgctgatccgcgggttgcccaagaccctgcggcgcaatttcgtgccggtgccggac
ttcgcccgcgccttcgccgaagcgcaccggcagccggacgcggatgcgttcaccggcgtg
ctggcgcgcttcctcaagcggctgaccggggtggaactcgccgccaccgatttcaacgag
ggcgcgctggagccgcacctgcgcatgaacctgcggttgctggcgcgcgacggccgccag
gtgctggccgagtcgcgtgatctcgatgcgctgcggacgcgcttcggcgccgatgccgac
gccgccttcgccgagcgtgccgccgaaggccttgcgcaggccgggttgaccacgttcccg
gacacaccggtgccgctgtcggtgcccggtgccggtggcatcaccgcatatcccgcgctc
gacgacgccggcaacagcgcccggctggcggtgtatgccgatgctggcgaggccgcacgc
cggcatccgggcggcgtgcgccggctgttgcgcatcgcgctggatgccaggttgcgccag
gcgcgcaagcagctgacggtcaagccgaagaccgcgctgctgtatgccgcgatcgaagcc
gcggcgccgcgcgcgacgcgtccggaaggcggcgacccgttgcgcgacgacttggtcgaa
ggcgcgttcaccgcactcacggccgatggcctgggtggcatccgcgacgcggcggcgttc
gccacccgccgtgatgcggtcggacgcgagctgttcggcgaggcgatgcgccggctgcat
ctggccgagcgcgtgctcgacagcgttgccgagatccgcgggcgcctcgagggcgggctg
atgggctgggcgcgcgccaacctcgacgacatgcgcgcgcacctcgacagcctggcgccg
ccgggcttcctgtcgatcacgccggatgcgctgctcgaccagatgccgcgttacctgcag
gcgctgtcgctgcgtgccgaacgtgcactgcgtgatcccctgcgcgaccagcagcggatg
ctcgaactcaagcccttcgtcgaggcactcgtcgaagccgaggccgacggcatcgcccac
gaccccgactggcgcgcgttccgccaggacctggaggaactgcgcgtgtcgctgcatgca
caggaactcggtgcacgcggcggcgtgtcgccgaagaagctggcgcgcaggctggaggcg
ctactcggctag
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