Lutibacter profundi: Lupro_00885
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Entry
Lupro_00885 CDS
T04235
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lut
Lutibacter profundi
Pathway
lut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lupro_00885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lut03019
]
Lupro_00885
03400 DNA repair and recombination proteins [BR:
lut03400
]
Lupro_00885
Enzymes [BR:
lut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Lupro_00885
Messenger RNA biogenesis [BR:
lut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lupro_00885
DNA repair and recombination proteins [BR:
lut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Lupro_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_5
HTH_69
HTH_36
PF0610-like_N
AAA_22
Helicase_C_2
Enc34_ssDNA-bd
Motif
Other DBs
NCBI-ProteinID:
AMC09897
UniProt:
A0A109RMS1
LinkDB
All DBs
Position
complement(188475..190370)
Genome browser
AA seq
631 aa
AA seq
DB search
MSTPLKILKNYWGYSQFKYPQKKIIESTLARRNSIVLLPTGGGKSLCYQIPTMLLDGVCI
VISPLIALIQDQVNSLKKKNIKAIALTSQLNQDQIITAFDNLRFGDFKFLYLSPEKLQSA
LIQEKIKQLKVAIIAIDEAHCISEWGHDFRPSYLQLKILKELQPNAIFMALTATATQKVL
DDIQQNLEIDNALLFKKSFQRNNLHYNVITTEDIYGKTLQIVRKINASLIIYTNSRKQTK
EVCDFLLKNNFKSSFYHGGLSSTQKNIAYTKWMKNETPIMVATNAFGMGIDKPNVRAVIH
INIPNSLENFIQEAGRAGRDDKTAYSILLTNKSNLFDTSTRFIANLASTKIVKNIYHHLN
QYYAIAIGETPSKLFDFSLQEFCHTYTLKLLQTYNAIKVLERENILLLDENYNKKSTLKF
LVSNSKVFDYINLKPSKSKLIKLILRSYGGIFDHYTIINEYTLSKKLNCTKNNIVKQLNE
LHTNGIVNYNYKNTTSKLSFLVPRDDKHTINAISKNIEQQNNLKLEKLKAVISYIEDSKT
CRNIQLLSYFNETLIKPCGTCDNCLAKEETGNLSPIILEHIITALKKQPYSSQELATFLN
HPESNILDSLKILLEKNKITITSQNKFKLNV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagtacacctcttaaaatactaaaaaattattggggttattctcagtttaagtatcct
caaaagaaaattattgaatcaacattagctagaagaaatagcatcgtattattaccaaca
ggtggtggaaaatctctttgttatcaaattcctacaatgcttttagatggtgtttgcatt
gtaatttctcctttaatcgcattaattcaagatcaagttaacagcttaaaaaagaaaaat
attaaagccattgcattgacttctcaattaaaccaagatcaaattattactgcttttgat
aatttacgctttggagattttaaatttttatatttatcacccgaaaaattacaatcagca
ttaattcaggaaaaaataaagcagttaaaagttgctattattgctatagatgaagcgcat
tgtatttcggagtggggacacgattttagaccttcatacctacaattaaaaattttaaag
gagttacaacccaatgccatttttatggccttaactgctactgctacacaaaaggtatta
gatgatattcagcaaaacttagaaattgacaatgcattattattcaaaaaatcttttcag
cgaaataatttacattataatgtaataaccaccgaagatatttatggtaaaacacttcaa
atagtacgcaaaataaatgcatctctaatcatttatacaaatagcagaaaacaaacaaaa
gaagtttgtgattttttattgaaaaacaattttaaaagtagcttttaccatggaggctta
tcatctacacaaaagaatattgcttatacaaaatggatgaaaaatgaaactccaataatg
gttgccactaatgcatttggaatgggtattgacaaacccaatgtaagagccgtaattcat
attaacattcctaatagtctagaaaactttattcaggaagccgggagagcaggaagagat
gataaaacagcctattcaatacttctaacaaacaaatctaatttatttgatacttcaaca
agatttatagcaaatttagcttcaacaaaaattgtaaaaaacatataccaccatctaaat
caatattatgcaattgcaataggagaaacaccttctaaactttttgatttttcgttacaa
gaattttgtcatacctatacattaaaattattgcaaacctacaatgctattaaggtttta
gaaagagaaaacattttacttttagatgaaaattacaacaaaaagtctactcttaaattc
ttggtaagtaattcaaaagtttttgattacataaacctaaaaccatctaaaagtaaattg
attaaattaattttaagaagttacggtggtatttttgaccattacaccataattaacgaa
tatacgctttcaaagaaattaaattgtacaaaaaataacattgttaaacaattaaatgaa
ttgcacacaaatggtattgtaaattataactataaaaatacaacttctaaattatcattt
ttagttccaagagatgataaacataccataaatgctatttcaaaaaatattgagcaacaa
aataatttaaaacttgagaaacttaaagctgtaatttcttatatagaagactctaaaact
tgtagaaatatccaattactttcctattttaatgaaactctaataaaaccttgcggaact
tgtgataactgtttagcaaaagaagaaactggcaacctctctccaattatacttgaacat
attataaccgctttaaaaaaacaaccatactcttctcaagaactagcaacttttttaaac
catccagaaagtaatattttagattcattaaaaatactattagaaaaaaataaaataaca
ataacttcgcaaaataaatttaaattaaacgtttaa
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