Lutibacter profundi: Lupro_03305
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Entry
Lupro_03305 CDS
T04235
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lut
Lutibacter profundi
Pathway
lut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lupro_03305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lut03019
]
Lupro_03305
03009 Ribosome biogenesis [BR:
lut03009
]
Lupro_03305
Enzymes [BR:
lut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lupro_03305
Messenger RNA biogenesis [BR:
lut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lupro_03305
Ribosome biogenesis [BR:
lut03009
]
Prokaryotic type
rRNA helicases
Lupro_03305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMC10337
UniProt:
A0A0X8G5A7
LinkDB
All DBs
Position
758141..759916
Genome browser
AA seq
591 aa
AA seq
DB search
MSTFMELGLNSNIIKALTDLGYENPTEIQSKSIPQVLNSKEDLKAFAQTGTGKTAAFSLP
IIEQIDTKSKDTQAIILSPTRELAIQIAKNIAEFSKHIDGFRTAAVYGGSNIEEQIRKLK
KGVHIVVGTPGRTVDLINRKQLKLSNVKWLVLDEADEMLNMGFKDELDKVLAVTPKEKQT
LLFSATFPKEVESIAKNYMHKPVEISAGKKNVGADQVSHQFYVVSERNRYAALKRIADVN
PNIYGIIFCRTRRETQEVADKLIKDGYSADALHGDLSQAQRDSVMGKFRKKNLQLLVATD
VAARGLDVTDLTHVINHKLPDQIESYTHRSGRTGRAGKEGISIAIVTGREKGKLHPIERL
IGKKFVSTSIPTGKEICQNQLLKLIDKVQDIKVNETEMADFLPSIYEKLKDLDREELIKR
FVSLEFNTFLSYYENAPDLNDSDQMRGGSDSRGRRRNDENMSRFFINIGRKDRLNPARLI
GLINEQQIAKNIEIGQIEILDTFSFFELDKNYTDETIAVFKENDVDFEGRNVNVEITEKK
RSGRSGGRRSDGDRKRRDKNSKGDFSKFGRNRSNTKNAFSSANKSSKRRKR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatttatggagttagggcttaatagcaatattattaaggctttaaccgattta
ggatacgaaaatcctacagaaattcaatcaaaatcaattcctcaagttttaaactcaaaa
gaagatttaaaagcatttgcacaaacaggtacaggaaaaactgctgcttttagtttgcca
attatagagcaaattgatacaaaaagcaaagatacacaagcaattatcttatcgccaact
cgcgaattagcaattcaaattgctaaaaatatagctgaattctctaaacatatagatggt
tttagaaccgcagctgtttatggagggtcaaatattgaagaacaaattagaaaactcaaa
aaaggggttcatattgttgttggtacaccaggtagaacggtggatttaattaaccgaaaa
caattaaaattatctaatgtaaaatggttagttttagatgaagcagatgaaatgctgaat
atgggttttaaagatgagttagataaagttcttgctgttacccctaaagaaaaacaaacc
ttactgttttctgcaactttcccaaaagaagtagaaagtattgcaaaaaattatatgcac
aaaccagttgaaattagtgctggtaaaaagaatgttggtgcagatcaagtatcacatcaa
ttctatgtagtttcagaaagaaataggtatgcagcgctaaaaagaattgcagatgtaaat
cctaatatttatggaattattttttgtagaacccgtagagaaacacaggaagttgccgat
aaattaataaaagatggctatagtgcagatgcgcttcatggagatttatcacaagctcaa
cgagatagtgttatgggtaaatttcgtaaaaaaaacttacagcttttagttgcaacagat
gtggctgccagaggtttagacgttaccgatttaacacatgttataaaccataaattacca
gaccaaatagagtcttatactcaccgaagtggtagaacaggaagagccggaaaagaaggt
atttcaattgcaattgttacagggcgtgaaaaaggtaaattacaccctattgaacgatta
attgggaaaaaatttgtgagcacctctattccaactggaaaagaaatttgccaaaatcaa
cttcttaaactaattgataaagtacaagacattaaagttaatgagactgaaatggctgat
tttctaccttctatttatgaaaaattaaaagatttagacagagaagaattaataaaacgt
tttgtttcacttgaatttaacacatttttatcatattatgaaaatgcacctgatttaaat
gacagtgaccaaatgagaggtggttcagatagtagaggaagacgaagaaatgacgaaaat
atgtctcgtttttttatcaatatagggagaaaagacaggttaaatcctgcccgattaatt
ggtttaattaatgagcagcaaattgcaaaaaatattgaaataggtcaaattgaaattcta
gatacattttcattttttgaattagacaaaaactataccgatgaaacaattgctgttttt
aaggagaacgatgttgattttgaaggtaggaatgtaaatgtagagattacagagaaaaaa
cgctctggaagaagtggtggaagaagaagcgatggagatagaaaaagaagagacaaaaat
tcaaaaggagattttagtaaatttggacgaaatcgttctaatactaaaaatgcttttagc
tcagctaataaaagctctaaaagaagaaaaagataa
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