Lutibacter profundi: Lupro_07855
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Entry
Lupro_07855 CDS
T04235
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lut
Lutibacter profundi
Pathway
lut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lupro_07855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lut03019
]
Lupro_07855
Enzymes [BR:
lut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lupro_07855
Messenger RNA biogenesis [BR:
lut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lupro_07855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMC11172
UniProt:
A0A109RPV2
LinkDB
All DBs
Position
1771975..1773258
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AA seq
427 aa
AA seq
DB search
MKFTDLGIIAPILKALTAEGYTHPTPIQEQSIPILLNRNDLLGCAQTGTGKTAAFTIPIL
QHLFNSRDDYKGRRRIRSLIMTPTRELAIQISENITAYGKYTGIKNVVVFGGVKQLSQTK
ALQQGTDILVATPGRLLDLISQGFISLKDVKYFVLDEADQMLDMGFIHDIKKIIVKLPTK
RQSLFFSATMPSAIIDLSSNILGNPQKITIKPKQATAEKIEQAIYFVSKPNKNKLLVHLL
GERPNSSVLVFSRTKHGADKIVRILAKAQIKAAAIHGNKSQGARQRALGNFKKGELNVLI
ATDIAARGIDVEELSLVINFDLPNIPETYVHRIGRTGRAKSNGLALSFCNVEEKAYLKDI
QKLIKQEIPVIREHSFVDDEIEETPVPKTPSKNKQKKSQHRSKSPRREGENTPKKKKWRP
YSKKRSS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagacttaggaattatagcacctattttaaaagcattaactgctgaaggt
tatacacacccaacaccaattcaggaacaatctatccctattttattaaatagaaatgat
ttattaggttgtgcacaaacaggaacaggtaaaactgcagcttttacaattcctatttta
caacatcttttcaacagtagagatgattataaagggagacgaagaataagatcgctaatt
atgactccaacaagagaattagccatccaaatttctgaaaatattacagcttatggtaaa
tacacaggaattaaaaatgtggtggtttttggtggagtaaaacagttatcccaaacaaaa
gcgttacaacaaggtactgatatattagtagcaacacccggcaggttacttgatttaatt
tcacaaggttttattagtttaaaagatgtcaaatattttgtattggatgaagctgatcaa
atgttagatatggggtttattcatgacattaaaaaaataatagtcaaattacctaccaaa
agacaatctcttttcttctcggccaccatgccgtctgcaattatagatttatcaagtaat
attcttggaaaccctcaaaaaataactattaaacctaagcaagcaactgctgaaaaaatt
gaacaagctatttattttgttagtaaaccaaacaagaataagttattagttcatttatta
ggagagcgccccaattcatctgtgttagtcttctcgagaacaaaacatggagccgataaa
attgtacgaattttagccaaagcacaaattaaagctgctgctatacacggtaataaatca
caaggtgcaaggcagcgagctttaggaaattttaaaaagggagaactaaatgtgctaata
gcaactgatattgctgcaagaggaattgatgttgaagaactatcgttggtaattaatttt
gatttacccaatattcctgagacttatgtgcacagaattggaagaactggccgtgcaaaa
tcaaacggcttagcactgtctttttgcaatgttgaagaaaaggcatatttaaaagatatt
cagaaattaatcaagcaagagattccggtaatacgagaacactcttttgttgatgatgaa
attgaagaaactccagttccaaaaacaccttcaaaaaataaacaaaaaaagtcacaacat
cgctcaaaatctccaagaagagaaggtgaaaatactcctaagaaaaaaaaatggagacct
tattctaaaaagcgtagttcttaa
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