Lutibacter profundi: Lupro_07895
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Entry
Lupro_07895 CDS
T04235
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lut
Lutibacter profundi
Pathway
lut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lupro_07895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lut03019
]
Lupro_07895
Enzymes [BR:
lut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lupro_07895
Messenger RNA biogenesis [BR:
lut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lupro_07895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MTS_N
Utp25_C
Cas3-like_C_2
SUa-2TM
AAA_22
AAA_19
HEM4
SBF_like
Motif
Other DBs
NCBI-ProteinID:
AMC11180
UniProt:
A0A0X8G6Z8
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All DBs
Position
1779981..1781216
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AA seq
411 aa
AA seq
DB search
MQFKNLQLNKPILRAISEKGYQLATPVQEQTIPLVLDKKDVIASAQTGTGKTAAFALPIL
QLLFDKQDAGKKAKKIRALIVSPTRELAIQIEDNFKTYGKYTNLRTTVIYGGISIEPQKD
TLKKGVDILIATPGRLLDLHKQDIVNLDYVEILVLDEADLMLDMGFINDVKKIERLCPKE
KQVLLFSATMPSRIIELSNSILKNPETIDVTPKSSAAESVHQKLYYVPKTKKMELCLHLL
RNTIKGDILIFRRTKFGVDKLEKMLRKNGYKVNSIHGDKTQSAREDALNKFKNKQVNILI
ATDVASRGIDIQNLDAVINFDMPNVPEIYVHRIGRTGRAGLTGSSHSFCAADERTYIQTI
EKLIGTTIPVEKEHPYPLDPKAKPEVYIKKGSNHKKGRKSAASKKNKKRWY
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaaaaacttacagttaaacaaacctattttaagagccatttcagaaaaggga
tatcagttagctactcccgtacaagagcaaacaattccgttggtattggataaaaaggat
gtaattgcatctgcgcaaactggtacaggtaaaacagcagcttttgcattgccaatttta
cagttgttgtttgacaaacaagatgcgggtaaaaaagctaaaaaaattagggcattaatt
gtaagcccaacacgtgaattagccattcaaattgaagataattttaaaacctacggtaaa
tacaccaatttaagaaccacagttatttacggtggaatttctattgagcctcaaaaagat
actcttaaaaaaggagttgatattttaattgcaacacctggaagactcttagatttacac
aaacaagatattgttaatttagattatgttgaaatcttggttttagatgaagccgactta
atgttagatatgggttttataaatgatgtaaaaaaaattgaacgattatgcccaaaagaa
aaacaagttttactgttttctgcaacaatgcctagtcgtataattgaattatcaaattcc
attttaaaaaaccctgaaactatagatgtgacacccaaatcatcagccgcagaaagtgta
catcaaaagctgtattacgttcctaaaactaaaaaaatggaattgtgtttacacctattg
cgtaataccataaaaggcgatattcttatttttaggcgtaccaaatttggcgttgataaa
ttagagaaaatgcttcgtaaaaatggatataaagttaacagtattcacggtgataaaact
caaagcgctagagaagatgctttaaataagtttaaaaataaacaagtcaatattttaatt
gctacggatgttgcttctcgtggaattgatattcaaaatttagatgctgttattaatttt
gatatgccaaatgttcctgaaatttacgttcatagaattggcagaacaggtagagctggt
ttaacaggaagttctcattctttttgtgctgctgatgaaagaacttacattcaaaccatt
gaaaaattaataggtaccactattcctgttgaaaaagaacacccttatccgttagatccg
aaagcaaaaccagaagtatacataaaaaaaggaagtaaccataaaaagggacgaaaatct
gctgcttctaaaaagaataaaaaacgttggtattaa
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