Lutibacter profundi: Lupro_11170
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Entry
Lupro_11170 CDS
T04235
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lut
Lutibacter profundi
Pathway
lut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lupro_11170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lut03019
]
Lupro_11170
03016 Transfer RNA biogenesis [BR:
lut03016
]
Lupro_11170
Enzymes [BR:
lut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Lupro_11170
Messenger RNA biogenesis [BR:
lut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Lupro_11170
Transfer RNA biogenesis [BR:
lut03016
]
Prokaryotic type
tRNA degradation factors
Lupro_11170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
DUF4837
Motif
Other DBs
NCBI-ProteinID:
AMC11796
UniProt:
A0A0X8G873
LinkDB
All DBs
Position
complement(2536310..2538457)
Genome browser
AA seq
715 aa
AA seq
DB search
MIPKVFTQIIDLGDGRTISLETGKLAKQAHGSVVVQMGNAMLLCTAVSNYNASNVDFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMS
SDDDVMPDALAGLAASAAIQLSDFPFETPISEVRVARINGEFIINPSRTQIEEADIDMMV
GASADSVMMVEGEMDECSEEEMAAAIKFAHEAIKIQCAAQVALAEAFGKKETREYETEIT
NEDLEKRILDATYQKCYDIAKKGTSKQERTQAFSEVKEEIIATFTEEEIAEYGDLISKYY
NKAQKTAIRNLTLNEGLRLDGRKTTEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLG
TSREANQIDMPTYQGEETFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKGMISK
DCPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVEMKKPVSGIAMGLISDGDKYAILS
DILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILGKITD
TIAKPNTDVKAHAPKMVSKIIPGDFIGALIGPGGKVIQELQKATGTTIVINEDPVTEEGI
VEILGTNQDGIDAVLAKIDAITFKPERGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHIS
ELAWERTNNVSDVVKMGDVFDVKYFGRDPKTRKEKVSRKALLPRPPREERKENKD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgataccgaaggtatttacacaaattattgatttaggagatggaagaaccatttcttta
gaaacaggaaaattagcaaaacaagcgcacggttcggttgttgtacagatgggaaatgcc
atgctattatgtacagccgtatctaattataacgcaagtaacgttgactttttaccatta
acggtagattatagagaaaaatttgcagcagcaggtcgttatcctggaggtttctttaaa
agagaagcaagaccaagtgatggagaagtactaacaatgcgtttagtagatagagtttta
agacctctttttcctaaagattaccatgctgaaacacaagttatgattcagttaatgtca
tctgatgacgatgtaatgccagatgctttagctggtttagccgcgtcagcagcaatacaa
ttaagtgactttccttttgaaacacccatttctgaagttcgtgttgctagaattaatggt
gaatttatcatcaacccaagcagaacacaaatagaggaagccgacattgatatgatggta
ggtgcatctgcagattcagtgatgatggtagaaggtgaaatggatgaatgtagcgaagaa
gaaatggcagctgcaataaaatttgcacatgaagccattaaaattcaatgtgctgcacaa
gttgctttagccgaagcttttggaaaaaaagagactcgtgagtatgaaactgaaataaca
aatgaagatttagaaaaaagaatacttgatgcaacatatcaaaaatgctatgacattgca
aaaaaaggaacttctaaacaagaaagaactcaagctttttctgaagtaaaagaagaaata
attgcaacttttactgaagaagaaatagcagaatatggagatttgattagtaaatattac
aacaaagctcaaaaaactgctattcgtaatctaactttaaacgaaggtttacgcttagac
ggacgaaaaacgactgaaataagaccaatttggtgtgaagtagattatttaccttcaaca
catggttcagcaatatttacaagaggtgaaacccaagctttggcaactgttacattagga
acttcaagagaagcaaaccaaattgatatgccaacttaccaaggtgaagaaacattttat
ttacattataattttcctcctttttgtacgggagaagctcgccctttaagaggtacttct
cgtcgtgaagttggacatgggaatttagcacaacgtgcattaaaaggaatgatttctaaa
gattgcccttacactgttcgtgttgtttctgaagtgttagaatctaacgggtcatcttct
atggcaactgtgtgcgctggaacaatggcgttaatggatgctggtgttgagatgaaaaaa
cctgtttcaggtattgcgatgggattaatttctgatggtgataaatatgctattttatct
gatattttaggcgatgaagatcacttaggggatatggattttaaagttactggtactgcc
gatggtattacggcatgtcaaatggacattaaaattaaaggattatcatatgaaatttta
gtgaaagctttaaaacaagcacgcgacggaagattacatattttaggaaaaataactgat
acaattgcaaaacctaatactgatgttaaagcacatgctccaaaaatggtttctaaaatt
attcctggagatttcattggtgctttaattggtcctggaggaaaagtaattcaagaatta
caaaaagcaactggaacaactattgttatcaacgaagacccagttactgaagaaggtatt
gtagaaattttagggacaaaccaagatggtattgatgccgttttagctaaaattgacgct
attacattcaaaccagaaagaggcagtgtttacgaagtaaaagttataaaaatgttagac
tttggtgccgtagtagaatacactgaagctcctgggaatgaagttctattacatatttct
gaattggcttgggaacgtacaaataacgtttctgatgttgttaaaatgggtgatgttttt
gatgtaaaatattttggtagagatccaaaaacaagaaaagaaaaagtttctagaaaagca
ttattaccaaggcctcctagagaagaaagaaaagaaaataaagattaa
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