Lactobacillus ultunensis: H4B44_01690
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Entry
H4B44_01690 CDS
T07197
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
luu
Lactobacillus ultunensis
Pathway
luu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
luu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4B44_01690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
luu03019
]
H4B44_01690
03009 Ribosome biogenesis [BR:
luu03009
]
H4B44_01690
Enzymes [BR:
luu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4B44_01690
Messenger RNA biogenesis [BR:
luu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4B44_01690
Ribosome biogenesis [BR:
luu03009
]
Prokaryotic type
rRNA helicases
H4B44_01690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QQP28839
LinkDB
All DBs
Position
358013..359503
Genome browser
AA seq
496 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL
QTIDKKEKAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLKHHV
PSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRKQTLL
FSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLALVFGRTKRRVDELTRGLQACGYNAAGIHGDLSQARRMTVLKRFREGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTK
KKMSPLRPPTDDQALRGQLKQAKSEIEDLMNGDLGKYTQDASELLDNYSALDLVAAFLKN
LSKDSTDVKVKITPEKPLPYKGDGRHHRGGRGRGRNNHGRGNYHRPRNNHNYRHNGNRGK
RGHGNGHEFIIKNKKD
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaggattaaatgacgcgcttcttaaggcaattaaacgctcagga
tttgaagaagcaactccaatccaagaacaaactattcctctcgctttagcagggaaggat
gtaattggtcaagctcaaacagggacagggaaaaccgctgcttttggcctaccaattttg
caaacaatcgataaaaaagaaaaagcaattcaagcaattattattgaaccaacacgtgaa
ttagctattcaaacacaagaagagctgtttcgtttaggtcgtgatgaacgtgctcatgta
caagtagtatatggtggagctgacattggtcgtcagattcgctcattaaagcatcatgta
ccttcaatcttggtaggtactccaggtcgtttgctagaccacttaaaacggggcacaatc
gatttagataaagttaaaactgttgtactagacgaagcagatgaaatgcttgatatgggc
tttattcaagatattgaaagcatcttgaagtatgctaagaatcgtaagcaaactttgtta
tttagtgccactatgcctaagccaattttacgaattggcgaaaagtttatgaataatcct
gagattgttcaaattaaagctaaagaattaactgcagatttaattgatcaatattttgta
cgagcaaaggaatcagaaaaattcgacattatgtgtcgtttaattgatgttcaaggtcca
gacttggctttggtctttggtcgtactaaacgtcgtgtagacgagctaacacgcggctta
caggcatgtggctataatgcagcaggaattcacggagacttgtctcaagcacgtagaatg
actgtattaaagcgattccgtgaaggaaaacttgatattttagtagctacagatgttgct
gctcgtggtcttgatatttcaggcgttactcacgtttataattacgatattccacaagat
cctgattcttatgttcaccgtattggtagaactggccgtgcaggacaaaatggtatctca
gtaaccttcgttacgccaaatgaaattggctatatgagaacgattgagcaacttaccaag
aagaagatgtcaccacttcgtccaccaacagacgatcaagctcttcgcggtcaattaaaa
caggctaaatcagagattgaagatttgatgaatggcgatttaggtaaatatacacaagat
gctagtgaattgcttgataactattcagctcttgatttagtagctgctttcttgaagaat
ttatccaaggattctactgatgtgaaagtgaaaattacaccagagaagccattgccgtat
aagggtgacggacgtcatcatcgtggcggtcgtggtagagggcgtaataaccatggccgt
ggcaattaccatcgccctcgtaataatcataattaccgtcataatggtaatcgtggtaaa
cgcggtcatggcaatggacatgaatttattatcaaaaataaaaaagattaa
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