Lactobacillus ultunensis: H4B44_01810
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Entry
H4B44_01810 CDS
T07197
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
luu
Lactobacillus ultunensis
Pathway
luu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
luu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H4B44_01810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
luu03021
]
H4B44_01810 (rpoC)
03400 DNA repair and recombination proteins [BR:
luu03400
]
H4B44_01810 (rpoC)
Enzymes [BR:
luu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H4B44_01810 (rpoC)
Transcription machinery [BR:
luu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H4B44_01810 (rpoC)
DNA repair and recombination proteins [BR:
luu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H4B44_01810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Lebercilin
Motif
Other DBs
NCBI-ProteinID:
QQP28859
LinkDB
All DBs
Position
385696..389349
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPRLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLK
KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDAFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADAMPKKPWPKGHEHGIFITTYGKIVFNQIFPDDYFYINEPTAENLNNPLDAKYFLNEGE
DIHEKIDAIGDDLIASPFKKDFLSDSIATISKYYKVQRTSEYLDDLKKLGYTSSTTSGIT
IGMTDVPEIQDKDEKVAKARKQVDLVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE
PLFDRLLGRFTAETVKDPKTGEVIVGKDVMMDEKMARKICDAGVTHVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATISEVDGVVDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVSEG
DTVHRGDKLTLGSVDPKELIQVTDTLTTEEYILAEVQKAYRMQGVDIADKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPEADVKKPDSV
YSIADIEKQMKEKDKAK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataagtttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcatatggtgaagttaagaagccagaaaccatcaactaccgtactttaaag
cctgaaaaagatggcttgtttgatgaaagaatttttggaccaactaaagactggtcatgt
gcctgtggtaagtacaagggtgttagataccgtggcattgtttgtgaccgttgtggtgtt
gaagttacttcttcaaaggtaagaagagaacgtatgggccacattgagttagcagctcct
gtaactcacatttggtactttaaaggtattccatcaagaatgggcttggtattggatatt
tctccaagattgcttgaagaagtaatttactttgccgcatatatcgtaattgacccaggt
gatactgatcttgaacctaagcaattattaactgaagctgaataccgtgaacaaaaggca
aagtacggtaatcgctttgaagctaagatgggtgctgaggctatccgtgaattgctcaag
aaggttgatcttgacaaagaagttaaggatttgaagaaagaacttcaaactgcaactggt
caaaaacgtactcgtgcaattagacgtttggatattttggatgcattcaagaattcaggc
aataaacctgaatggatggttatggatgctgttccagttattccaccagatcttcgccca
atggtacaacttgaaggtggacgttttgctacctcagatttgaacgatttgtacagacgt
gttattaaccgtaataatcgtttaaagagattacttgatttgaacgctccaagcattatc
gttcaaaatgaaaagcgtatgcttcaagaagccgttgatgccttaattgataatggtcgt
cgtggtcgaccagtagttggaccaggtaaccgaccacttaaatcactttcacacatgctt
aaaggtaagcaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgactattctggt
cgttcagttatcgatgtttcaccaaaattgaagttctatcaatgtggtgttcctcgtcca
atggctttggaattgttcaaaccatttgtaatgcatgagttggttaagcgtggtattgca
tctaacattaaaaatgctaagcgtaagattgatcgtgaagatgatgatatttgggatgta
ttggaagacgttattaaagaacgtccagttcttttgaaccgtgcacctactcttcaccgt
ttaagtattcaagcctttgaaccagttttggtaccaggtaagtcaattagacttcaccca
ttagcttgtgaagcttacaatgccgacttcgatggtgaccagatggctattcacgtccca
ctttctgatgaagctgttgctgaatcacgtttgttaatgcttgctgctcaccatatcttg
gctcctaaggatggtaagccaattgttactccatcacaggatatcgttttgggtaactat
tggttgactcaagctgaacgtggtcgtgaaggtgaaggcatgatcttcagttcaccagca
gaagcaactgtagcttatgaaaatggtgatattcactatcatactattattggtatgtca
gctgatgctatgccaaagaagccatggcctaagggtcatgaacatggtatcttcattact
acttacggcaagattgtattcaaccaaattttcccagatgattacttctacattaatgaa
ccaactgcagagaatttgaacaatccacttgatgctaagtacttcttaaatgaaggtgaa
gatattcatgaaaagattgacgctatcggtgatgatctgattgctagtccatttaagaag
gacttcttatcagattcaattgctactatttccaagtactacaaggtacaaagaacttca
gaatatctagacgatttgaagaaattaggatataccagttcaactacttcaggtattact
attggtatgaccgacgttcctgaaattcaagataaggatgaaaaggtagctaaggcacgt
aagcaagttgatcttgtttctaagcaatttagacgtggtttgattactgaacaagaacgt
cacgatcgagtaattagcatttggaatgcatgtaaggatgaaatccaaaacgaaattgct
caaattcactcacctcgtaacccaatttcaatcatggctgactcaggtgcccgtggtaac
atttctaactttactcagttagctggtatgcgtggtttgatggccactcctaacggtggt
ttgttcgaaattcctgttacctcaaactttaaggaaggtttgtcagttctggaattgttc
atgtccactcacggtgctcgtaagggtatgactgatacggctttgaagactgctcagtca
ggttacttaactcgtcgtttggttgacgttgctcaggatgtcattattcgtgatgatgat
tgtggtactgatcgtggtattacagttagcgccatcatggaaggtgacgaaatgatcgaa
ccattattcgatcgtttgcttggtcgtttcactgctgaaactgttaaggatcctaagacc
ggtgaagtaatcgtcggtaaagatgtaatgatggacgaaaagatggctcgcaagatttgt
gatgctggtgtaactcatgttaagattcgttcaattcttacttgtgatactccacacggt
gtatgtcgtaagtgttatggtatgaaccttgctactggtgaagaagttgaagttggtgaa
gcagttggtactgttgctgcacaatcaattggtgaacctggtactcagcttactttgaga
actttccacaacggtggtgttgccggtgctgaagatattactcaaggtttgcctcgtgtt
caagaattgttcgaagcacgtaaccctaagggtcgtgcaaccatttctgaagtagatggt
gtagttgattcaattcaagaaaacccagcagaacatacccgtgaaattacagttaagggt
aagattgataccagaagttacagtgttccttatactgcttctgttgctgtatctgaaggt
gatactgttcaccgtggtgataagttaactcttggttctgttgatcctaaggaattaatc
caagttactgatactttgactactgaagagtacatcttagccgaagttcaaaaggcctac
agaatgcagggtgtagatattgccgacaagcacgtggaagtattaacccgtcaaatgctt
caaaaggttcgtgtccttgatccaggtgaaactgacattttaccaggtgaagttatggat
attggtcaatttagagaccgcaacaaggaagtaattatttctggtggtattccagcaact
gcacaaagcgtaatcttaggtattaccaaggccgctttggaaactaatagtttcttgtca
gccgcttcattccaggaaactactcgtgttcttactgatgcttcaattagaggtaagaac
gatccacttcttggacttaaggaaaacgttattatcggtaagattattccagctggtact
ggtatgcctgtataccgtagcatggaacctgaagctgatgttaagaaaccagattcagtt
tactcaattgctgatattgaaaagcaaatgaaagaaaaagataaagctaagtaa
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