Lactobacillus ultunensis: H4B44_06080
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Entry
H4B44_06080 CDS
T07197
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
luu
Lactobacillus ultunensis
Brite
KEGG Orthology (KO) [BR:
luu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
luu03009
]
H4B44_06080 (rlmD)
Enzymes [BR:
luu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H4B44_06080 (rlmD)
Ribosome biogenesis [BR:
luu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H4B44_06080 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_15
PrmA
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QQP27701
LinkDB
All DBs
Position
complement(1216299..1217651)
Genome browser
AA seq
450 aa
AA seq
DB search
MKKDDILDLKIDSLSPEGGGLAKYDDKTVFVRDALPGEEVKAKVLSIHKNTIDTKSVDII
KANPARVYGSDEKWANDGYARLANLKYDQQLKFKEDRIKKLLNKYGFKEVKVNKILPSPL
TKGYRNEIVLPVREVKGQLEVGFFEPRTGRFIPLNKSIITNEAVVTAVYAVRDILRKLKV
PAYDPNTNSGFIRDIDVRRSQGKKGMIVTLITHENDRVDLPEIVGLITEKLHNVNGVVLN
YNPHKTDEIFGKSNIPLWGNDYVEDELDGIQFKISPKSYFQANGSQLKPITDLALSLLDL
KDTDKLIDAFCGVGTVGLLAAKKVAAVRGIDAERVSIQDARENADTNKIDNATYYNGSVE
QVLSRFAKNDEKGTVIMATPPAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVRDLACFKK
KGYTCTEITPIDTAPQTPEVKCFGVLVPED
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagatgacattttagatttgaagattgatagcctatctcctgagggaggggga
ttggccaaatatgatgacaaaactgtatttgtaagggatgctcttccaggtgaagaagta
aaagctaaggttttatcaattcacaagaatacgattgatactaagagcgtagatattatt
aaggcaaatccagctcgtgtttatggttctgatgaaaaatgggctaatgatggttatgct
cgtctagccaatttgaagtatgatcaacaacttaaatttaaagaagatagaataaagaaa
ctattaaataagtatggctttaaggaagttaaagttaataagattttaccaagtccatta
actaagggctaccgtaatgaaatagttttacctgtacgtgaagtaaagggacaacttgaa
gttggcttctttgaaccaagaacaggacgttttatacctttaaataaatcaattattaca
aatgaagctgtagtaactgctgtttatgctgttcgcgatattttacgtaaattaaaagtt
cctgcttatgaccctaatacaaatagtggttttattagagatatagatgttcgtcgctca
caaggcaaaaaaggtatgattgttactttaatcactcatgaaaatgatagagtagatttg
cctgagattgttggtttaattactgaaaaattgcacaatgtcaatggtgttgtattaaac
tataatcctcataagacagatgaaattttcggcaagagtaatatcccactttggggtaat
gattatgttgaagatgaattagatggcatccaattcaagatttctccaaagagttatttc
caagccaatggttcacaattgaagccaattactgatttggctttgagtttattggatcta
aaagatactgataaactaattgatgcattttgtggtgtaggtactgtaggattgctggct
gctaagaaggtagctgcagtacgcggtattgatgctgaaagagtatcaattcaagatgca
agagaaaatgcagatactaataagatcgacaatgcaacctactacaatggtagtgttgaa
caagtattgtctcgttttgctaaaaatgatgagaagggtactgttattatggctactcca
cctgctaagggattgtctcatggctttgtcgatgctgcagctaaaatgcacccaagaaga
attgtttatggttcaactaatccagatactatggtacgtgatttagcttgctttaagaag
aagggttacacttgtactgaaataaccccaattgatactgcaccacaaactccagaagtt
aaatgttttggtgttttagtacctgaagattaa
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