Lutimonas zeaxanthinifaciens: QZH61_00010
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Entry
QZH61_00010 CDS
T09226
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
luy
Lutimonas zeaxanthinifaciens
Pathway
luy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
luy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QZH61_00010 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
luy03019
]
QZH61_00010 (rnr)
03016 Transfer RNA biogenesis [BR:
luy03016
]
QZH61_00010 (rnr)
Enzymes [BR:
luy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QZH61_00010 (rnr)
Messenger RNA biogenesis [BR:
luy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QZH61_00010 (rnr)
Transfer RNA biogenesis [BR:
luy03016
]
Prokaryotic type
tRNA degradation factors
QZH61_00010 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
S1CSD-TOTE-2
OB_RNR_1st
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WKK66023
LinkDB
All DBs
Position
546..2690
Genome browser
AA seq
714 aa
AA seq
DB search
MSRRKRRILKSKRNKINNLDRKILDIFNKNSNRSLNYKQIAAKLEITDANGRNQIVKELQ
RLKGQNRLDEVDRGKFILVPLSHYHEGIVEVTSRGNAYVICEDLEHDIYIPSRNLNKALH
NDYVKVYIYKRQKNKKQEGDIVEIIEREKSEFVGVLQKNKNFGFVVPDDPKMYVDIFISP
EELNDAKDGDKVLATITDWPKNSKNPFGRITQVLGRPGDHDTEIHSILLEYGLPYSFPEE
VEAYASKIPIEITKEEIAKRRDMRKDLTFTIDPKDAKDFDDALSFKVLKNGNFEIGVHIA
DVSHYVKENTVLEDEAYDRATSVYLVDRVVPMLPEILSNNVCSLRPNEEKLTFSVVFEMN
DKGHVVKPWFGRTVTFSDQRFTYEEAQEIIEGNTDGVKSSLVKAITTLDGLAKKIRKRRM
QNGAISFDKTEVKFNLDDKANPIGVYIKESKDANKLIEEFMLLANRRVAEFISKKKKTFV
YRVHDEPNIDKLALLQGIITKFGYSINTNTRESTSESLNKLLEEVHGKAESNMIETLTIR
SMSKAIYTTDNIGHYGLAFDHYTHFTSPIRRYPDVMAHRLLQLYLDGRPSVKAEKYEEKC
SHSSEKEFLASKAERDSIKYMQIKYMQDHEDQEFEGVISGVTEWGIYVEIIENKCEGMVR
IKDIQSDYFIFDEKQYALIGQADKRMYQLGDQVTVTVKNTDLERKHLDFNLIED
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaggaaaagaagaatattgaaatctaaaagaaacaaaatcaataatttagat
agaaaaatattagatatatttaataagaattcaaacagatctctcaattacaaacaaatt
gcggctaaacttgaaattacagatgcaaatggtagaaaccagatcgtaaaggaacttcaa
agattaaaagggcaaaacagactggatgaagtggaccggggaaaatttattttagttccg
ctcagccactatcatgaaggaattgtagaggtaacttcaaggggtaatgcctatgtgatt
tgcgaagatctggaacatgatatttacatcccttcaagaaacttaaataaagcattacac
aatgattatgtaaaagtttatatctataaacgtcagaaaaataagaagcaggaaggtgat
attgtagaaatcatagaaagagaaaaatctgaatttgtaggggtcctgcagaagaacaaa
aattttgggtttgtcgttcctgatgaccctaagatgtatgtcgatatttttatatctcct
gaggaattaaatgatgccaaggatggagataaggttctggctacaataactgattggcct
aaaaattcaaaaaatccttttggtcgaattacacaggtattaggtcgccccggagatcat
gatactgagattcattctattctgcttgaatatggattaccctactcttttcctgaagaa
gtggaagcttatgcatcaaagattcctattgaaattactaaagaagaaattgctaaaaga
agggatatgcgtaaggatcttacctttacgatcgatcctaaggatgcaaaggattttgat
gatgctttgtcgtttaaagtcctgaaaaatggaaattttgagattggtgttcatattgca
gatgtttctcattatgtaaaggaaaatacagttcttgaagacgaggcctatgacagagct
acttcggtctatttagtagatagagtagtacccatgcttcctgaaatattatcgaataat
gtatgctctctaaggccaaatgaagagaaattgactttttcagtggtatttgaaatgaat
gataagggacatgttgtaaagccgtggtttggaagaacggtaaccttttctgaccaaaga
tttacctatgaggaagcccaggaaatcatagaaggaaatacggatggagttaaatcttca
ctggttaaggcaattacaactttggatggtttagctaaaaaaataagaaaaagaagaatg
cagaatggtgcgatttcatttgataaaacagaagtgaaatttaaccttgatgataaagcg
aatccgattggagtttatattaaagaatccaaggatgccaacaaacttattgaggaattt
atgcttttagccaacagaagagtagctgaatttatttctaaaaagaagaaaacttttgtt
tatcgggttcatgacgaaccaaatattgataaactggctttattacagggtattattacg
aaatttggatactcaataaatacgaatacaagggagtctacctcagaatcattaaataaa
ttacttgaagaagtgcatgggaaggcagaatcaaatatgattgaaaccctaacgatcaga
tcgatgagtaaagctatttataccacggataatattggacattatggcctggcttttgat
cattatacacattttacctctccaataagacgttatccggatgttatggcacaccgtttg
cttcagttatatttagacggaaggccttcagttaaagctgaaaaatacgaggagaaatgc
agtcattcttcagaaaaggaatttttagcgagtaaggctgaaagagactctattaagtat
atgcagatcaaatacatgcaggatcatgaagatcaggaatttgaaggagttatatccgga
gttactgaatggggtatctatgttgaaatcattgagaataaatgtgaaggaatggtcaga
ataaaggatattcaaagtgattactttattttcgatgaaaagcaatacgctttaattggg
caggctgataaaagaatgtatcaattaggtgatcaggttacggtaactgttaaaaatact
gatctggaacgaaagcatttagattttaatctcattgaggattag
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