Lutimonas zeaxanthinifaciens: QZH61_00440
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Entry
QZH61_00440 CDS
T09226
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
luy
Lutimonas zeaxanthinifaciens
Pathway
luy03410
Base excision repair
luy03430
Mismatch repair
luy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
luy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QZH61_00440 (recJ)
03430 Mismatch repair
QZH61_00440 (recJ)
03440 Homologous recombination
QZH61_00440 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
luy03400
]
QZH61_00440 (recJ)
DNA repair and recombination proteins [BR:
luy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
QZH61_00440 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
QZH61_00440 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QZH61_00440 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
WKK66108
LinkDB
All DBs
Position
complement(98717..100417)
Genome browser
AA seq
566 aa
AA seq
DB search
MRWIEKIKPEKEKIELLSKSLGIDLVLSTILIQRGIESFDEAKDFFRPSLDQIHDPFLMK
DMEKAVRRIEKAIRESEHIMIYGDYDVDGTTAVSLVYDYLHRSYKKISTYIPDRYNEGYG
ISYTGIDYAEDNEVSLIIALDCGIKAVDKIDYAMKKGIDFIICDHHRPGELIPNAIAVLD
PKREDCQYPYTELCGCGIGFKLIQALEQNKGNQLDNLYSSLDLVATAIAADIVPLTGENR
ILAYFGLQVINNQPRPGIKALIHGVKKPLLNITDVVFIIAPRINAAGRMKHGSFAVELLT
EKDFSAALEYAAEIDMYNSERKALDQSITEEALLQIRENNEENRFSTVVRKDTWHKGVIG
IVASRLIEKYYRPTLVFTKSGTKLAASARSVKGYDVYAALNQCGDFIEQFGGHKYAAGLT
LLPENYIGFKEKFEQVVAKDIPSSSQEPQIEIDAEIYLSDITPKFNRILKQMGPFGPQNM
KPVFMARGLRDNGYARKIGENQDHLKLNIISGTDQKTYNAIGFRLSEKYEMVTSGTPFKA
AFTVEENHWNGITSIQLNIKDIKPDD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggatcgaaaaaataaaacctgaaaaggaaaaaatcgaacttctttcaaaatct
ttaggaatcgacctggttttaagtaccattttgatacagagaggcatagaaagtttcgat
gaggctaaagatttttttaggccatccttggatcaaattcatgatccttttttaatgaag
gatatggagaaagcggtccgtcgaattgaaaaagcaattcgcgaatccgagcatataatg
atctatggggattacgacgtggatggaaccacggcagttagtctggtttatgattattta
caccggtcttataaaaaaatctcaacttacattcctgacagatacaatgaaggctacggt
atttcttatacaggaatagactatgctgaagacaatgaggtgagtctgatcattgccctt
gactgtggcataaaagcagttgataaaattgattatgccatgaaaaaagggattgatttt
attatctgtgaccatcacaggccaggagaattaattcccaacgccatcgcggttctggat
cctaagagggaagactgtcagtatccctataccgagctttgcggatgcggaataggcttt
aaattgattcaggcacttgagcaaaacaagggaaaccaacttgataatttgtattcttcg
ctggatttggttgctaccgcaattgccgcggatattgttcccttgacaggagagaaccgg
attcttgcttattttggccttcaggtgatcaataatcagccccgtccaggaataaaagct
ttgattcatggcgttaaaaagcctttgttaaatattacagacgtggtatttattatagca
ccaaggataaatgcagccggcagaatgaaacacggatcatttgctgtcgaacttcttacg
gaaaaagatttttcggctgccttggaatacgcggctgagattgatatgtataattccgaa
agaaaagccttggatcaatctataaccgaggaggccttattacagatcagagaaaataac
gaagaaaaccggttttctactgtcgtccgaaaagacacttggcataagggtgttattggg
attgtagcctctcgattaattgaaaagtattacaggcccacgcttgttttcaccaaaagc
ggaactaagctggctgcgtcagcacggtctgtaaaaggatatgatgtatatgcggctctc
aaccagtgcggtgatttcatagaacaatttggggggcataaatatgccgccggacttacg
ctgttacctgaaaattatatcggatttaaggaaaagtttgagcaagttgtagcaaaggat
attccttcatcttcgcaagaaccacaaattgaaatagacgcagaaatatacttatccgac
ataacacctaaatttaatcgaatcctaaaacaaatggggccttttggtcctcagaatatg
aaaccggtatttatggccaggggccttcgtgataatggatatgccagaaagatcggtgaa
aatcaagatcatctgaaactcaatatcatcagcggaacagatcaaaagacctataatgca
attgggttcagactttctgaaaaatatgaaatggtcacctcaggcactccttttaaagca
gcttttacagtagaggaaaaccattggaatggaattacttccatacaactaaacattaaa
gacataaaaccagatgactaa
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