Lutimonas zeaxanthinifaciens: QZH61_02825
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Entry
QZH61_02825 CDS
T09226
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
luy
Lutimonas zeaxanthinifaciens
Pathway
luy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
luy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QZH61_02825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
luy03019
]
QZH61_02825
Enzymes [BR:
luy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QZH61_02825
Messenger RNA biogenesis [BR:
luy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QZH61_02825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
Utp25_C
EB1
HP0268
CMS1
Motif
Other DBs
NCBI-ProteinID:
WKK66563
LinkDB
All DBs
Position
639423..640709
Genome browser
AA seq
428 aa
AA seq
DB search
MTFKELGLIPQILRTLEEQGYKRPTPIQQQAIPTLLKERDLLGCAQTGTGKTAAFAIPIL
QHLSQPHHEPSGRRRIKALIITPTRELATQIGESFTVYGKYTKLKNTVIFGGVKQRAQVD
ALRRGVDILVATPGRLLDLIGQKKISLRDIEYFVLDEADQMLDMGFIHDIKKIIALLPKQ
RQSLFFSATMQPKIVALSKQILGNPERVTIEPEQTTAEKVDQSLYYVSKGNKIKLLKHLL
QEHEMDSVLVFSRTKHGANKIVKLLLRDGFECAAIHGNKSQKAREIALDNFKKGKISILV
ATDIAARGIDIDELSYVVNYDLPNVPESYVHRIGRTGRAGLSGMAISFCDALERPYLKDI
EKLIEKKVTIIHEHPFLNEDLENESKKPDRNHGHKRKAKPRSSSRKKKSGGKNNYWRKRK
TGGHKKSS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactttcaaagaattaggtcttattcctcagattctccggacactggaggagcagggt
tataaaaggccaacccccatacaacaacaggcgattcctactttactaaaagagagagac
ctgctgggatgtgcccagacaggtacaggtaaaactgcggcatttgcgattccgattctt
cagcacttgagccagcctcatcatgagccgagtggaagaagaaggataaaggccttgatc
attacccccacaagagagttggccacccaaataggagaaagctttacggtatatggcaaa
tacacaaaattaaagaatacggtaatttttggtggggtgaagcaaagagctcaggttgat
gctctgcgaagaggtgtcgatattttggtagccaccccgggtaggcttctggatctgatc
ggccaaaaaaagatcagtcttcgggatattgaatattttgtgctggatgaagcagatcag
atgcttgatatggggtttattcatgatataaaaaagataatcgccctattacccaaacaa
agacagtcattatttttttcagccacgatgcagccaaaaattgtggctttgtcaaaacag
atcttgggcaacccagaaagagtgaccatagagcctgaacagactacggccgaaaaggtc
gatcaaagcctttactatgtttcgaagggaaataagatcaaacttctaaaacatttgctg
caggagcatgagatggattctgttctagtgttttcaaggaccaaacacggggcaaataag
atcgttaaactgttgttgcgagatggttttgagtgtgccgctattcatggtaataaatct
cagaaagcccgtgaaattgcacttgataattttaaaaagggcaagatttccatacttgta
gccacagacattgcggccagagggatagatattgatgaattgtcatatgttgtaaactat
gatctgcctaatgtacctgaatcctatgttcatagaatagggaggaccggtagagcgggg
ctgagcgggatggctatttcgttttgtgatgccttggagaggccttacttaaaagacata
gaaaagcttatagagaaaaaagtgaccataattcacgagcatcctttccttaatgaagat
ctggaaaatgaatcgaagaaaccggatcgaaaccacggtcacaaaagaaaggccaaaccc
agatcatcttcacgcaaaaagaaaagtggtggtaagaacaattactggagaaagagaaaa
accggaggacataaaaaatcttcataa
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