Lutimonas zeaxanthinifaciens: QZH61_11935
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Entry
QZH61_11935 CDS
T09226
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
luy
Lutimonas zeaxanthinifaciens
Pathway
luy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
luy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QZH61_11935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
luy03021
]
QZH61_11935 (rpoC)
03400 DNA repair and recombination proteins [BR:
luy03400
]
QZH61_11935 (rpoC)
Enzymes [BR:
luy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QZH61_11935 (rpoC)
Transcription machinery [BR:
luy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QZH61_11935 (rpoC)
DNA repair and recombination proteins [BR:
luy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QZH61_11935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WKK65290
LinkDB
All DBs
Position
complement(2653482..2657753)
Genome browser
AA seq
1423 aa
AA seq
DB search
MARQREKYTVKKFNKITIGLASPETILEKSKGEVLKPETINYRTHKPERDGLFCERIFGP
IKDYECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEPLQKMDFLTEEEYLNILETLPQENQY
LDDNDPDKFIAKMGAECLIELLARIDLDSLSYELRHKANTETSKQRKMEALKRLNVVEAF
RDANSRKENKPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGQEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERISTPDH
KVKGEGTTFYSLEEVKIAFNEKKVDLNASIKVREKDFDENGELVNKIIKTTVGRVLFNEV
VPEAAGYINEVLTKRSLRDIIGDILKVTDVPTTGRFLDNIKNMGYKFAFQGGLSFSLGDI
IIPEEKHTMIDDANKQVDSIMSSYNMGMLTNKERYNQVIDIWGSTNNRLTELSMKRLRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIINEEDCGTLRGLEVKPLKNND
EIVETLSERIFGRVSLHDVYDPRTDELIIEAGGLFDEDSVKKVEEAELDTIEVRSALTCE
AKKGICTKCYGVSLSSNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDSR
LVANHSGELVIDDLKTVDGVDSEGNAVKIVISRTSEFKILDKNSGIVLSTNNIPYGSHIF
VDGKKQVKKGDVICQWDPYNGVIVSEFGGKAVFEDLIEGVTYQVEMDEQTGFKEKVISDS
KKKRVIPTLHVQTTKGETLRSYSLPVGAHLLIEEGQKIEAGQILVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVISFGKIKRGNREIIVESKLGDIKKYLVKLSNQILV
QENDFVKAGMPLSDGATTPTDILNIMGPSKVQEYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVKVIDSGDTIFLENQLVHKNDFMEVNDNIYGLKVIEDAGDSTNMKAGQIVSARAL
RDENSILRRNDKNLLIARDAVPATAEPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKEDYLEGLKENVIVGKRIPAGTGMREYDHIIVGAKEEIEEN
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacaaagagaaaaatacactgtaaaaaaattcaataaaattaccattggtctg
gcttcgcctgaaaccatccttgagaaatcaaaaggagaggttttgaaacctgagaccatt
aattatcgtacgcacaaaccagaaagagacggattgttttgtgagagaatctttggacct
atcaaagattatgaatgtgcctgcggaaaatataaaagaatacgatacaaggggatcatc
tgtgatcgatgtggagttgaagtaactgaaaagaaagttcgaagagaccgtgttggacat
atcaaccttgttgttcccgtcgcgcatatctggtactttagatcattgccaaataaaatg
gggtaccttttaggtcttccatctaaaaagcttgacatgatcatctactacgaacggtat
gtagtgatccagccgggtattgcaaaaaatgaagagggagagccattgcaaaaaatggat
ttccttactgaggaagagtatttgaatattcttgaaaccttacctcaggaaaatcaatat
cttgacgacaacgatcctgacaaattcatcgccaaaatgggggctgagtgtttgatcgaa
ctgcttgcgagaattgaccttgacagtttatcatacgaattgaggcataaagcgaataca
gaaacttcgaagcaacgtaaaatggaagctttgaaacgattgaatgttgtagaagctttt
agagacgcaaattcaagaaaagaaaacaagccggaatggatgatcatgaaggttgttcct
gtaattccaccagagcttagaccattggttcctttggatggagggcgttttgccacttcg
gatttgaatgacctttacagaagggtaattatacgtaacaatcgtttgaaaagattgatg
gagatcaaggcacctgaggtgatcttgagaaatgagaagcgtatgttgcaggaatctgta
gattcattatttgacaacacaagaaaatcttctgctgttaaaacagaatcgaacagacct
ttaaagtcactttcagactcgcttaaaggtaagcaaggacgattcagacaaaaccttttg
ggtaagcgtgttgattattctgcacgttctgtaattgtcgttggaccggaattgagactg
tatgaatgtggattgccaaaagatatggcggcggaattgtacaagccttttgtcatcaga
aaactgatcgaaagaggtattgttaagaccgtgaaatctgcaaagaaaattatagataag
agagaacctgtggtttgggatatcctggaaaatgtactgaaaggacatcctgtattgttg
aacagggcccctaccttgcacagactgggtattcaggcctttcaaccaaaactgatagag
ggtaaagcgattcagttgcatccattggtatgtactgcctttaacgcggatttcgatggt
gaccagatggcggtgcaccttccgcttggacaggaagcaatcttagaggcccagttgctc
atgctggcttctcacaatattttgaatcctgccaatggatcaccgattacggtaccttct
caggatatggtattgggtctttactatatgaccaaagaaagaatttctacacctgaccat
aaagtaaaaggtgaaggaactactttctattctttagaggaagttaaaatagctttcaat
gagaagaaagtggatcttaacgcgagcatcaaggttagagaaaaggattttgatgagaat
ggtgaattggttaataagatcattaaaacaacagttggaagggtattattcaacgaggtt
gtgccggaagcagccggatatatcaatgaggtattgaccaaaagatctttaagagatatt
attggtgatattcttaaggtaacggatgtacctacaacaggaagattccttgacaatatc
aagaacatgggatacaaatttgccttccagggtggattgtcctttagtttaggggatatc
attattcctgaagagaaacacacaatgatcgacgatgcaaataagcaggttgattcgatc
atgtcgagttataatatgggtatgttgaccaacaaggagcgatacaaccaggtaattgac
atctggggatctaccaataacaggttgacggagctttcaatgaagagattaagagaagat
cagcaagggtttaactctgtatatatgatgcttgactccggagcaaggggttcaaaagag
cagatcagacagttgactggtatgcgtggattgatggctaagcctaaaaaatctactgcc
ggtggtggtgaaattattgaaaacccaattctttccaactttaaagaaggactttcgatt
cttgaatactttatctcaacacacggtgcgagaaaaggtctggcggatacggcattgaaa
actgcggatgcgggttacttaacaagaagacttgtagatgttgctcaggatgtgattatc
aatgaagaagattgtggtacgctgagaggattggaagtaaaacctttgaagaacaacgat
gagattgttgaaacactttctgaaagaatttttggaagggtttccttacatgatgtatac
gatcctagaaccgatgaattgatcattgaggccggtggtttatttgatgaagattcggta
aaaaaggtagaagaggctgaactggatacgatcgaagttcgttctgcactgacctgtgag
gcgaaaaaaggaatttgtaccaagtgttacggagtgagtctttcaagcaacaaaatggtt
caaagaggtgaagctgttggagttgtcgcagctcagtcaattggagaaccaggaacgcag
ctgactttgagaaccttccacgtaggtggtattgcaggaaacatttctgaagacagccga
ttggtagcaaatcattcgggtgaattggtgatcgatgatttgaagactgtagatggagta
gacagtgaaggaaatgcagttaagattgttatttcgagaacatctgaattcaaaattttg
gataagaactcaggaatagttcttagtacaaataatattccttacggttctcatattttt
gtcgacggaaagaaacaagtgaaaaaaggtgatgtcatttgccagtgggatccatataat
ggtgtgattgtttcagaatttggtggtaaagctgtttttgaagatctgattgaaggtgtt
acctatcaggtggaaatggatgaacagactggctttaaggaaaaagtaatttcagattct
aaaaagaaaagagttattccaaccttacacgttcagaccacaaaaggagaaacattaaga
tcatattcgcttcctgttggggcacacttattgatcgaagaaggtcaaaaaatagaggct
ggacaaattttggtaaaaatacctcgtaaatcaggaaaagccggagatattaccggaggt
cttcctcgagttacggaattgttcgaagcgaggaatccatcgaaccctgcggttgtttct
gaaatagacggtgtgatctcatttggtaagatcaagagaggtaacagagagatcatcgtt
gaatccaagcttggagacattaaaaaataccttgtgaaattgtcgaaccagatcctggtt
caggagaatgattttgtaaaagcaggtatgccattgtctgatggcgccacaactccaacg
gatatcttaaatatcatggggccttcaaaggttcaggagtatttggtgaatgagattcag
gaggtataccgtcttcaaggggtaaaaatcaatgataagcactttgaagttgttgtaaga
caaatgatgcgtaaagtaaaagtgatcgattcaggtgatacgatattccttgaaaatcaa
ttggttcacaaaaatgactttatggaggtgaatgataatatttacggacttaaggtcata
gaggacgcaggagattccacgaatatgaaagcgggtcagatcgtttctgcaagggcttta
agggatgaaaattctatcttgagaagaaatgacaaaaacttgctgattgcacgtgatgca
gttcctgcaacggcagaaccaattctgcaagggatcacaagagcgtcacttcagaccaaa
tcatttatctcagctgcttctttccaggaaactacgaaagtacttaacgaagctgcagta
agtggtaaggaagattaccttgaaggactaaaagaaaatgtgattgttggtaagcgaatt
cctgccggaacaggaatgagagaatacgatcatatcatcgttggtgccaaagaggaaata
gaagaaaattaa
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