Limosilactobacillus vaginalis: LV515_01175
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Entry
LV515_01175 CDS
T06850
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lva
Limosilactobacillus vaginalis
Pathway
lva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV515_01175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lva03019
]
LV515_01175
03009 Ribosome biogenesis [BR:
lva03009
]
LV515_01175
Enzymes [BR:
lva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LV515_01175
Messenger RNA biogenesis [BR:
lva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LV515_01175
Ribosome biogenesis [BR:
lva03009
]
Prokaryotic type
rRNA helicases
LV515_01175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
LidA_Long_CC
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QFS33624
LinkDB
All DBs
Position
269367..270872
Genome browser
AA seq
501 aa
AA seq
DB search
MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII
EHVDTDNPNIQAIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLKQHP
QILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQTLLF
SATMPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREIEKLTRV
RMLPLKPPTAEEAFKGQVASAFNDIDELISQDSTERYQEAAEKLLATHDATDLVAALLNE
MTKEPASDVPVKITPERPLPRRNHRNGRSGHGYRGPRDHRHNNYGGHHRHNNGGRSRSRR
HDNHGSNHSSRHAFNIRHRED
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggattgtcagatagtttattaaaggcaatcaagcggagtggt
tatgaagaagcaacaccgattcaagaacaaaccattccaatggtattaaagggacaggac
gtaattggtcaagcacagacaggtacgggtaaaacagctgcgtttgggttgccaattatc
gaacacgttgatacggataaccctaatatccaagcaattatcatttcaccaacccgggaa
ttagcaatccaaacccaagaagaattatttcgtttaggaaaggataagcacgttcgggta
caggtcgtttacggtggagctgatatccgtcgccaaattcgtaatctgaaacaacatcca
cagatccttgtaggaacacccggacgactccgtgatcacttgaaccggcatacggtgaaa
ttagatcacattaagacattagtgctcgatgaagcagacgaaatgctgaacatgggattc
ttagatgatattgaagcgatcattgatcagacgcctgctgatcggcaaacactcttattt
tcagccacaatgccaccagaaattaagaagatcggggttaagtttatgactgacccgaca
atggtgcggattaaggctaaggaattaacaactgatttagttgatcaatactatgtcaaa
gcacgagactacgaaaagtttgatattatgacccgactgattgacgttcaagatcctgac
cttaccattgttttcggtcggactaagcgccgggttgatgaactatcacggggactagtt
gcccggggttacaatgcagccgggatccatggtgatctaagtcaggatcgccgaactaag
atcatgaagaaattcaagcacggcgaacttgatatcttagtagcaaccgatgtggcagct
cggggattggatatttcaggggtgacccacgtttacaattacgatattccgtcagatcca
gacagttatgttcaccggattggccggactggtcgtgccgggcaccatggtgtttcacta
acctttgttacaccaaatgaaatggactacctgcgggaaatcgaaaaactaacccgggtt
cggatgttaccattgaagccgccaacagctgaagaagcctttaagggtcaagttgctagt
gcctttaatgatattgatgagttgatttctcaagattccacggaacgttatcaagaagct
gcggaaaagttactagcaactcatgatgctacagacctagttgctgcgcttctgaacgaa
atgactaaggaaccagctagtgatgtgccagtcaaaatcactccagaacggccattgcca
cggcggaatcaccgtaatgggcgctcaggacatggttaccgtggtccacgtgatcatcgc
cataacaactatggtggtcatcatcgccataacaacggtggtcggagtcgttcccgtcgt
cacgataatcatggtagtaatcattctagtcgacatgcgtttaatatccgtcatcgggaa
gattag
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