Limosilactobacillus vaginalis: LV515_02560
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Entry
LV515_02560 CDS
T06850
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lva
Limosilactobacillus vaginalis
Pathway
lva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV515_02560 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lva03019
]
LV515_02560 (rny)
Messenger RNA biogenesis [BR:
lva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LV515_02560 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
PIGBOS1
DUF5117
Propep_M14
UPF0154
KH_2
OAD_gamma
Motif
Other DBs
NCBI-ProteinID:
QFS35050
LinkDB
All DBs
Position
557062..558621
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AA seq
519 aa
AA seq
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MEAFGLVFAALAMIIGVIIGYAIHKVSVEKQLKAANQSAEQILSTAKQDAATAKKEAILE
AKEESHRYRESVEQELKQRRNEVQKQEDRLLQRETSLDRKDDALEKREGAVGKREHQLEQ
QTNQLKVSQEKADSLIEQRQQELEKVAQLSHEDAKTQVLDQVKEELKTERAIMIRDSEQN
AELVADKTAKKLIVEAIQRSAADVVSEATVSVVNLPNDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVVLSGFDPVRREIAKIALEKLIQDGRIHPARIEEAVDKARQEMDANLRE
TGEQVLFDLGIHSMHPDLIKTIGRMKYRTSYGQNVLDHSIEVAKLAGIMAAELGEDVTLA
KRAGLLHDIGKAIDHEVDGSHVELGVELTTKYKENKVVINTIASHHGDVPAKSVIAALVQ
AADAISGARPGARSESLEQYIQRLKKLESIANDHNGVDHSYAIQAGRELRVIVKPKKISD
LQAIALSHDIKHEIEQELEYPGHIKVTVIRETRAIDYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggaagctttcggcttagttttcgccgcgcttgctatgattatcggtgttattattgga
tatgcaattcataaggtttctgttgaaaagcaactcaaagctgctaatcaaagtgcagag
caaattctttccactgcaaaacaggatgctgcgacggcgaaaaaagaggctattttagag
gccaaggaagaaagccatcgttaccgagaaagtgttgaacaagaactgaaacaacggcga
aatgaggttcagaagcaagaagatcgactcttgcaacgggaaacctcattagatcgcaaa
gatgatgctcttgaaaagcgagagggtgctgttggtaaacgggagcaccaacttgaacaa
caaactaaccagttaaaagtatctcaagaaaaggcagattcgttaattgaacagcgacaa
caagaattggaaaaagttgcccaattgtctcacgaggatgcaaaaacccaggtcttagat
caggttaaggaagagctaaagaccgagcgggcaattatgattcgtgatagtgaacaaaat
gctgaattggttgctgataaaacagcaaagaagctgattgttgaagcaattcaacgaagc
gctgcggatgttgtttccgaagcaacggtttctgttgttaacttaccaaacgatgacatg
aaggggagaattattggtcgagaaggacgaaatattcggaccctagaaactctgacggga
attgatttgattattgatgatactcctgaagctgttgtgttaagcggatttgatccggtt
cggcgtgaaattgctaagattgctttggaaaagctgattcaggatggacgtattcatccg
gcaagaattgaagaagctgttgataaagcccgtcaagaaatggatgctaaccttcgagaa
actggtgaacaagttctcttcgatctcggaattcattcaatgcatccggacttgattaag
acaattggtcggatgaagtaccggactagttacggtcaaaacgtccttgatcattcgatt
gaagttgctaagcttgctggaataatggcagcagagttaggagaagatgtgacccttgct
aagcgggcaggtcttcttcacgatattggaaaggcaattgaccacgaagttgatggttcg
catgttgagctaggtgttgaattaactaccaagtataaggaaaataaagtagtaattaac
acgattgcttcacaccacggtgatgttccggcaaaatcagtgattgccgcgcttgttcag
gctgctgatgctatttctggtgcacgccctggtgcgcggagtgaatcacttgaacaatat
attcaacgattaaagaaactggaaagtattgcaaatgaccataatggtgtcgatcatagt
tacgcaattcaggcaggtcgtgaattgcgggtaatagttaaaccaaagaagatttcggat
cttcaagcaattgctttgtctcatgatattaaacatgaaattgaacaggagcttgaatac
cctggtcatatcaaggtaactgttattcgtgaaactcgagcgatcgactacgcaaagtaa
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