Limosilactobacillus vaginalis: LV515_03880
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Entry
LV515_03880 CDS
T06850
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lva
Limosilactobacillus vaginalis
Pathway
lva03030
DNA replication
lva03430
Mismatch repair
lva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV515_03880 (dnaE)
03430 Mismatch repair
LV515_03880 (dnaE)
03440 Homologous recombination
LV515_03880 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lva03032
]
LV515_03880 (dnaE)
03400 DNA repair and recombination proteins [BR:
lva03400
]
LV515_03880 (dnaE)
Enzymes [BR:
lva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV515_03880 (dnaE)
DNA replication proteins [BR:
lva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LV515_03880 (dnaE)
DNA repair and recombination proteins [BR:
lva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LV515_03880 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QFS34090
LinkDB
All DBs
Position
811517..814867
Genome browser
AA seq
1116 aa
AA seq
DB search
MDFVPLQVKSSFSLLRSPIRINELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIK
PVIGLQLTIALNNVDGTNLELLFLAKDRAGYQNLMELSTRQQTSDRDTLPLTFEQIKPFL
SSLYVIIPPQSTVFSWLKAEDTVVNLLHESTDQDSLLLGINPQLDQIQRSTLTQLAASHS
LPLVGVSPVEYLNADDLFASKVLQAIDANTQLEKVEEKAKELGKDYLQPQADILRAYQAV
NLEQAADKTVEIAVKCNIDFEFKQPILPHFDTPTGKSSAEYLRYLCIEGLKKRQIAPGLK
LVDYQKRLAKELKVIHEMGFDDYFLIVWDVMRFAHRTKITTDPGRGSAAGSLVAYALAIT
DIDPLQYNLLFERFLNPERAQMPDIDLDIPDNRRSEVLEYVHQKYGHNRVAQIITFGTLA
AKQVIRDVSRVFGLNRYAINELTGALPHGLHISLAGSLKESQRLRNLLNDHPEYRLLYRV
AQKLEGLPRHYSIHAAGIVLSEKPLHEIVPLQNGSEGLLMTQFPKDTVEALGLLKMDFLG
LRNLSIMDNSLKLIRQRNPQFDLSKISLADSKTLALFQKGLTDGVFQFESAGIREVLVNL
HPDSFEDIVAVNALYRPGPLENIPHFIARKQGKEHYQLPDPSLEPILGATYGILVYQEQV
MQLASVMAGFSLGEADLLRRAMSKKKRATMEGMRAKFMNGAQANGYSAELAKRVFNYIDQ
FANYGFNRSHAVAYSKMAFQMAYLKANYPAEFFTALMNAEPNVDKLKMHVQDARRSGVKL
VGPRINESQQQFSLSQNQLFFGLTAIKGLRRDFIREILQERQQNGPYKDIRNFISRLASK
WQKPELIAPLIYAGAFDDLGYNRAEMIDALPMLISGIQLFSSTNELEADPELQSTIAARQ
EYPLTERLAKENEYLGVYLSGHPVTQYQDLAIKYRVQPASQLRPGQTVTILMLINRVKTI
HTKKDHRQMAFLSGTDQTGEIEATVFPRQYTRYQSLLKSNQVVMINGHTEQREGHGLQVI
VDQIRDANELRQRQHHTQQRWFLRILPENDNQQVLQRLYQFMTSHRGPIPVIIYYPENDQ
KKIQPQSRWLNSQTETRQGLIKILGKDNVVLQKSPQ
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtggattttgtaccgctccaagtaaaaagtagcttttctctgttaagaagtccaattcgc
attaatgaattggtcacaactgcaaaagaacgcggctactctgcaattgcattgactgat
aagaacgtcttatatggggcaattgatttttacaacgccgctaaaaaagcaggtattaaa
ccagtaatcggcttgcaattaacaattgcgttaaacaatgttgacgggactaacctggaa
ttgctgtttttggctaaagatcgcgcagggtaccaaaatttaatggagctttccactcgt
caacaaacgagtgatcgtgatacgcttccgttaacttttgaacagattaagccgtttctt
tcgtcgctatacgttattattccaccacaatcgacagtttttagttggttaaaggccgag
gatacagttgttaatcttcttcacgaaagcactgatcaggatagtctccttttaggaatt
aatccccagttagaccaaattcaacgctcaacattgacccagctagcagcgagtcattcc
ctgccactagtaggggtcagtccagtcgaatatttgaatgcagatgatttgtttgccagt
aaggtccttcaggcaattgatgctaatactcagttagaaaaagttgaagaaaaagctaaa
gaacttggaaaggactaccttcaaccccaggcagatattttaagggcctaccaagcagtt
aatcttgagcaagcggctgacaagacggttgaaattgcagtaaaatgtaatattgacttt
gaatttaagcagccaattctcccgcactttgatacgccaacggggaaatcttctgctgaa
tatcttcgttacttatgtattgaagggctaaaaaaacggcagattgcgccaggcttaaaa
ctagttgactaccaaaaaaggttagctaaggaactaaaagtaatccatgaaatgggattt
gatgactatttcctgattgtttgggacgtaatgcgttttgctcaccggacaaaaattaca
acagatccgggaaggggatcagccgcaggatcattagtagcgtatgctttagcaatcact
gatattgatccgctgcaatataatcttttatttgaacggtttcttaatcctgaacgagct
caaatgccggatattgaccttgatattcctgataatcggcgaagtgaggttcttgaatac
gtccaccagaagtatggacataatcgagttgcccaaattattacttttgggacactagca
gccaaacaggttattcgtgatgtaagtcgggtctttggattaaatcgttacgcaattaat
gaattaacaggagcactcccccatggcttgcacattagtctggcagggagcttgaaagaa
tcccagcggttacgcaaccttctgaatgatcacccagaataccgattactataccgagtg
gcacaaaaattggaaggacttcctcgccattactcaatccatgcagcggggattgtttta
tccgagaagccgcttcatgaaattgttcctctgcagaacgggagtgaagggttattgatg
actcagttcccaaaggataccgtagaggcattggggctattaaagatggatttccttggc
ttgcgaaatctttcaataatggacaatagcctaaaattaattcgtcagcgaaatccacag
tttgatctttcaaagatctcattagcggattctaaaacgttagctcttttccaaaaaggg
ttgactgatggtgtattccaatttgagtcagcgggaattagggaagtattagttaatctt
catcctgatagttttgaagatattgttgcggtcaatgcactttatcgaccaggtccgctt
gagaatattcctcactttattgctcgtaaacagggaaaagagcattaccagttgcctgat
ccatcactagaaccaatcttgggggcaacgtatggcatcttagtctaccaggaacaggta
atgcagctggcatcggtaatggcaggatttagtttgggtgaagccgatcttttgcgtcgt
gcgatgagtaagaagaagcgtgcgacaatggaggggatgcgggctaaattcatgaatggc
gcccaagcaaatggttattcggcagaattggcaaaacgggtttttaactacattgaccag
tttgctaactatggctttaatcgatcacacgcggttgcctactcaaagatggctttccaa
atggcttacctaaaagctaattatcctgcagaattctttaccgcgttgatgaatgccgaa
ccgaatgttgataaattaaagatgcatgttcaggatgcccgtcgttcaggcgtgaagcta
gtgggcccccggattaacgaaagccaacagcagttttcactatcccagaatcaattattc
ttcggcttgactgctataaaggggcttcgtcgtgactttattcgtgaaattcttcaagaa
cgacagcaaaatggtccctataaggacattcgcaatttcatttctcgcttagctagtaaa
tggcaaaagccggaattaattgcgccgttgatttatgcaggtgcgtttgatgatctcggc
tataaccgtgctgaaatgattgatgcgttaccaatgctgatctccggaattcaattattt
agcagtactaatgagctggaagcagatccggaattgcagtccacaatcgctgctcgccaa
gagtatccgttaacggagcgcttagcaaaggaaaatgaatatttaggagtttatctttca
ggacatccggtgacccagtatcaagatctagcaattaagtatcgagtccaaccagcaagt
cagctccgtcctggtcaaaccgttacgatattaatgttaattaaccgggtgaaaacaatt
cacactaaaaaggatcatcgtcaaatggcgttcctatcaggaacagatcaaactggtgaa
attgaggccacggtctttccgcgacaatatacccgatatcaatcattattgaagagtaat
caggtagtaatgattaatggacatacggagcaacgagagggccatggacttcaggtaatt
gttgatcagattcgtgacgctaatgaattgcgtcaacgccaacaccatacccaacagcgg
tggttcttgcggattttgccagaaaatgacaaccagcaagttctgcaacggctttatcag
tttatgacgtctcatcggggccctattccagttattatctactaccctgaaaatgaccaa
aaaaagattcaaccgcaatcacggtggctgaattcgcaaactgaaacgcgtcagggattg
ataaaaattttaggcaaggacaatgttgtccttcagaaaagtcctcaataa
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