Limosilactobacillus vaginalis: LV515_04530
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Entry
LV515_04530 CDS
T06850
Name
(GenBank) ATP-binding cassette domain-containing protein
KO
K03701
excinuclease ABC subunit A
Organism
lva
Limosilactobacillus vaginalis
Pathway
lva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LV515_04530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lva03400
]
LV515_04530
DNA repair and recombination proteins [BR:
lva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LV515_04530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LV515_04530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
nSTAND1
AAA_15
DnaJ_CXXCXGXG
AAA_21
AAA_29
DUF4350
RsgA_GTPase
nSTAND3
DUF463
cobW
AAA_33
zf-C2H2_3
Motif
Other DBs
NCBI-ProteinID:
QFS35067
LinkDB
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Position
complement(946001..948514)
Genome browser
AA seq
837 aa
AA seq
DB search
MQSTIPAEIEVRGGRVHNLKNINVNIPLHKFVAISGLSGSGKSSLAMGILYEEGSRRYLE
ALSTYTRRRIKLGAQAQVDSVKQIPSALALHQRPAVPSERATVGTMSEIFNVIRLIFSRL
GSPVCPNGHRLKPSLEVAQAMSKSGDEMGVLTCPECGVKFNAFSAEDFAFNSDGACKRCQ
GTGRVRELDEEKLIGDENLTLDEGAVASWHLPGRNFMPQVAEQAGVRINVPYKDLSPKEK
NFVLNGPSKKYKMDFVSGTGRVFHDFNALYENAHEAVLESAKTSKSARAQQRINEFFHSS
VCPVCHGTRLRPELLTQLAGGKNIAEVTDLTLGELEQWKQKVLSELPTNMGKMATAIFKQ
FDDNLRPLLELGLDYLSLSRNGNTLSTGELQRIQLSRTLRTQTTGVLYVLDEPSIGLHPD
NINGLLHVFHELVEQGNSLVVVDHNIDIISAADWVIEIGPGSGAEGGKVIDQGTPAELKR
KKSSLIGPFLNGKARIKVRKTSSKRAASETNFTVSDYFNLKNVTATIPTNRITAVTGFSG
AGKTSLILDSLVPALKAQEKGEPLPKQVDNLDTPLKSVVSVDAVPVGKSTRSTVATYTSI
MDNLRRLFAAQPAAKEKHWTASYFSYNNKQGACPNCGGTGIVTLDIQYLPDMQQVCPVCN
GDRYNKKIQQIKWHDYSIVDLLNLDVRHAIPIFKDIPKIQRELKLLDEVGLGYLHLGEST
PTLSGGEAQRLKLVKHLNRQQKTTLFVFDEPSVGLHPLDVQVLLQVMQRLIDRGATIIII
THDVNLMVNADYLIDLGPRGGRNGGRIVAQGHPTSLIHNPKSLTTQYLAEFVSRFQN
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatcaacgattcctgcagaaattgaagtgcggggtggtcgggttcataatttgaaa
aatattaacgttaatattccgctacataaatttgtcgcaatttctggtttatctggttct
gggaaaagctcgttagcaatgggaatcctgtatgaagaaggttcccggcggtacttggaa
gctttatctacgtatacgcgacggcggatcaaattgggtgcccaggcacaggttgatagc
gttaaacaaatcccgtcagcactagcacttcatcaacgtccagcagttccgtctgagcga
gcaactgttggaacaatgagtgagatctttaatgtaattcgactaattttttctcgctta
ggttcacctgtctgtccaaatggccaccgattaaagccaagtcttgaggtagcacaggcg
atgagcaagtctggagacgaaatgggcgttttaacctgccctgaatgcggcgtgaagttt
aatgccttttccgctgaagactttgcctttaattctgatggggcctgcaaacgatgccaa
ggaactggccgagttcgtgaactagacgaagaaaaactaattggcgatgagaatctgacg
ctggatgaaggtgcagtggcttcatggcaccttcctggtcggaattttatgcctcaagtt
gctgagcaggctggcgtccgaattaacgtcccctataaggatctttcacctaaggaaaag
aactttgtcttgaatggaccaagcaagaaatacaagatggattttgtctcgggaactggt
cgagtctttcatgattttaatgccttgtatgaaaatgctcatgaagcagttcttgagtcg
gcaaagacaagtaaaagtgctcgggcacagcaacgaattaatgagttctttcattcatcc
gtttgtcctgtttgccatgggacccgcttacgaccggaacttctaactcaactagctggc
ggaaaaaacattgcagaagtcactgatttaactcttggcgaacttgaacaatggaagcaa
aaggttctaagcgaattgccaacgaacatgggtaaaatggcaactgcaatctttaagcaa
tttgatgacaatcttcgcccattgttagagcttggtttagattacctttccctttcacgg
aacggtaataccttatcaactggtgagttacagcgaattcaattatcccggacattacgg
acacagacaacaggcgttttgtatgttctggatgaaccgtcgattggtctccatcccgat
aacattaacggtctccttcatgtatttcatgaactggttgaacaaggtaattcactggtg
gtggttgaccataatattgatattattagtgctgcagattgggtgattgagattggtcct
ggttctggtgccgaaggaggaaaggtaattgatcaggggactcctgctgaattaaagcgg
aagaaaagttcactaattggtccatttttgaacggtaaagcccggatcaaagttcgcaaa
acatcaagtaaacgggcagcttctgaaactaattttacagttagtgactactttaaccta
aaaaatgttactgccacgattccaacaaatcgaattaccgcagtcactggattttcgggt
gcggggaaaactagtctaattcttgatagcttagttccggctttaaaagctcaagagaaa
ggggaaccacttcccaaacaggtcgacaacttagatactccactcaaaagtgttgtcagt
gttgatgctgttccggtgggaaagagtacccgttcaacagttgcgacgtatacaagtatc
atggataatctccggcggctttttgcggctcaaccagctgcaaaggagaagcactggact
gcaagttacttctcttacaataataaacagggcgcttgtccaaactgtggtgggacaggg
atcgtaacccttgatatacaatacttaccggacatgcagcaggtttgtcccgtttgtaac
ggtgatcggtataataagaaaattcaacaaattaagtggcatgattattcaatcgttgat
ttgttaaacctcgatgttcgccatgcaattccgatctttaaggatataccgaaaattcag
cgtgaattaaagcttcttgacgaggtcggccttggctatcttcatcttggtgaaagtacg
ccaacattatctggtggagaagctcagcggttgaaactcgttaagcatttgaatcgtcaa
caaaaaacaactctttttgtcttcgatgagccatcggttggtctccatccccttgacgtc
caagtcttgcttcaggtaatgcaacggttaattgatcggggagcaacgattattatcatt
actcatgatgtcaacttaatggtaaacgctgattatttaattgatttgggaccacgtggg
ggtagaaatggtggacggattgttgcccaaggtcatccaactagcctcattcataacccg
aagagcttaaccactcagtatcttgcagaattcgttagccgtttccaaaattaa
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