Limosilactobacillus vaginalis: LV515_07645
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Entry
LV515_07645 CDS
T06850
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lva
Limosilactobacillus vaginalis
Pathway
lva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LV515_07645 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lva03021
]
LV515_07645 (rpoC)
03400 DNA repair and recombination proteins [BR:
lva03400
]
LV515_07645 (rpoC)
Enzymes [BR:
lva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LV515_07645 (rpoC)
Transcription machinery [BR:
lva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LV515_07645 (rpoC)
DNA repair and recombination proteins [BR:
lva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LV515_07645 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QFS34729
LinkDB
All DBs
Position
complement(1526606..1530241)
Genome browser
AA seq
1211 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYEC
ACGKYKRIRYKGRVCDRCGVEVTSSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVLDPGDTPLEKKQLLSEAEYRDKKAEFGDRFTAEMGAAAIKKLLA
DVDLNKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVLDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLRMNQMGLPVP
MALELFKPFIMHELVKRGLSANVKAAKRKIDRRDDDVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKSMRLHPLVCTAYNADFDGDQMAIHVPLSDEAQAEARLLMLAASHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAEMAYRNNYVSLQTRVGVQ
VSAFPDKPFTDEQRGKIMVTSVGKLLFNRILPKDFNYINEPTADNITKGVDDRFFLDPGE
DINEYLENAPLVPPFKKGFLSDLIAEVYKQYKVTKTSQFLDRIKDLGYYESTISGLTTAM
SDIHDLPEKPEIIKKARKQVALVTKQFRRGLITDDERYDRVIGIWNDAKDKVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVLSNFYEGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLY
DRIMGRYTMKSVFDPKTGEKIVGKNVLIDETMAQKIVDAGVKKVTIRSAFTCNTEHGVCE
RCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNEDITQGLPRVQEI
VEARNPKGRATITEVTGEVESIEENPAERTKDVTVKGETDTRTYTLPITARMRVAEGDFI
HRGTALNEGSIDPKELIRVRDVLSTETYLLAEVQKVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDMLPGQLMDIGQFRDANYKTLVAGNIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSTYRNIKPKEVNVAAYSIKDL
EAKMKEEDKQN
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataaatttgaaagtatgcagatcggcctggcatcaccagataagatc
cgtagttggtcttacggggaagttaagaagcccgagaccatcaactaccggactttaaag
ccagaaaaacaaggtctgtttgacgaacgaatctttggcccaactaaggactatgaatgt
gcttgtggtaagtacaagcggattcgctacaagggtcgtgtctgtgaccgctgtggtgtt
gaagttactagttcaaaggttcgtcgtgaacggatggggcacattgaattggccgctccg
gtttcccatatttggtacttcaaggggattccaagtcggatgggtcttgtcttagacatg
agtccacgatcacttgaagaagttatttactttgcttcatacgttgttttggatccaggt
gatactccacttgaaaagaagcaattgctttctgaagcagaataccgtgacaagaaggct
gaatttggcgaccgctttactgctgaaatgggagccgctgctattaagaagttattagca
gacgtcgaccttaataaggaagcagccgaattaaaggaagaactaaaggaagcaactggt
caaaagcggactcgtgctatccgtcgtttggatattttggaagcatttatcaagtctggt
aacaagccggaatggatggtccttgatgttattcctgttatgccacctgatttacggcca
atggttcaacttgaaggtggccggtttgctacctctgacttaaacgatttataccggcgg
gttattaaccggaataaccgtttgaagcgtcttttgaagttgcaagctccaggaatcatt
gttcaaaacgaaaaacggatgctccaagaagccgttgatgccttaattgataatggccgt
cgaggtcgtcctgtttcaggtcctggtaaccgtccattgaagtccctttctcaccttctg
aaggggaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgattactctggt
cgttcagttattgatgttggtccatcattacgaatgaaccaaatggggcttcctgttcca
atggctcttgaattgttcaagccatttatcatgcacgaattagttaagcgtggtttatcc
gctaacgttaaggcagctaagcggaagattgaccgtcgtgatgatgatgtctttgatgtt
cttgaagatgttatcaaggaacacccagttcttcttaaccgggcccctacattgcaccgg
ttaggtatccaggcctttgaaccaattctggtttctggtaagtcaatgcgtcttcaccca
ttggtatgtactgcttacaatgccgattttgatggggaccagatggcgatccacgtacca
ctttctgatgaagctcaagctgaagcacggctattaatgcttgccgcttctcacattttg
agtcctcgtgacggtgaaccaatcgtttctccatctcaggatatggttatcggtaactac
tacatgaccactgaagataagggtcgtgaaggtgaagggatgatcttcaaggataccgat
gaagctgaaatggcataccggaacaactatgtttcactccaaactcgtgttggtgtacaa
gtttcagcattccctgacaagccatttactgatgaacaacgcggtaagatcatggtaact
agtgtaggtaagttattgttcaaccggattcttcctaaagacttcaattacattaacgaa
cctactgctgataacattactaagggtgttgatgaccgcttcttccttgatccgggtgaa
gatatcaacgaataccttgaaaatgcaccactagttccaccattcaagaagggcttcttg
tcagacttaattgctgaagtttacaagcaatacaaggttaccaagacttctcaattcctt
gaccggattaaggaccttggttactacgaatcaactatttctggtttaactaccgcaatg
tcagatattcatgacttgcctgaaaagccagaaattattaagaaggctcgtaagcaagtt
gccttagttaccaagcaattccgtcgtgggttgattactgatgacgaacgttacgaccgg
gttattggtatctggaacgatgcaaaagacaaagttcaaaacaagttgattgaacatatg
gacatccataatccaatcaacatgatgtctgactcaggtgctcgtggtaacatttctaac
tttactcagcttgccggaatgcgtgggttgatggcttctccaaacggtaagattatggaa
ttgccagttctttctaacttctatgaaggtttgtcagtgctggaaatgttcatttcttct
cacggtgctcgtaagggaatgaccgataccgccttgaagactgctaactcaggttacttg
actcggcggttagttgatgttgctcaggatgttgttgttcgtgaaaaggactgtggcact
gaccgtggccttgaagttactgcaattacaaacggtaacgaaatgatcgaaccactttac
gaccggatcatgggtcgttacactatgaagtctgtctttgatccaaagactggcgagaag
atcgttggtaagaacgttctaatcgacgaaacaatggcacaaaagatcgttgatgctggc
gttaagaaggttactattcgttctgcatttacttgcaacactgaacacggtgtttgtgaa
cgatgctacggccgaaacgcagctactggtgaccgggttgaagccggtgaagcagttggt
accgttgccgctcaatcaatcggtgaaccaggtactcaattgaccttgcggaacttccac
actggtggtgttgccggtaacgaagatattactcaaggtctccctcgtgttcaagaaatt
gtggaagcacgtaatcctaaggggcgtgcaaccattactgaggttactggtgaagttgaa
tcaatcgaagaaaatccagcagaacggactaaggatgttactgttaagggtgaaactgat
actcggacatacaccttaccaattactgcacggatgcgggttgctgaaggtgactttatt
caccgtggaactgctcttaatgaaggttcaattgatcctaaggaattgattcgggttcgt
gatgttctttctacagaaacttatctccttgctgaagttcaaaaggtttaccgtatgcag
gggatcgatctgttagataagcacgttgaaatcatgattcgtcaaatgatgcggaaggtt
cgtgtcatggatccaggtgacacagatatgttgccaggacaattaatggacattggtcaa
ttccgtgatgctaactacaagacattagtagccggtaatattccagctactgctcgtcca
gttatcttaggaattaccaaggctgcccttgaaactaacagtttcttatcagctgcttca
ttccaggaaactactcgtgtcctgactgatgctgctattcgtggtaagaatgacccatta
gttggtttgaaggaaaatgttattatcggtaagatcattccagcaggtactggtatgagt
acgtaccggaacattaagccaaaagaagttaatgttgctgcttactccatcaaagattta
gaagctaagatgaaggaagaagacaagcaaaattaa
DBGET
integrated database retrieval system
