Lipotes vexillifer (Yangtze River dolphin): 103068501
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Entry
103068501 CDS
T03090
Symbol
TRIM56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lve04121
]
103068501 (TRIM56)
Enzymes [BR:
lve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103068501 (TRIM56)
Ubiquitin system [BR:
lve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
103068501 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_5
ANCHR-like_BBOX
RING_XB3-XBAT31
DUF4407
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
103068501
NCBI-ProteinID:
XP_007468891
UniProt:
A0A340Y5C8
LinkDB
All DBs
Position
Unknown
AA seq
778 aa
AA seq
DB search
MSAGRREAALYLKRPEEDSWPFRMVSQGSSPSLLEALSSDFLACKICLEQLRVPKTLPCL
HTYCQDCLAQLAEGSHLRCPECRESVPVPPTGVAAFKTNFFVNGLLDLVKARAGGDLRAG
KPACALCPLMGGASAGGPATARCLDCADDLCQACADGHRCTRQTHSHRVVDLVGYRAGWY
DEEARERQAAQCPQHPGESLRFLCQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLE
GLLAGMDSNLAKLEATRLAEEEALACLREQAAKVGTQVEEAAEGVLRALLAQKQEVLGQL
RAHVEAAEEAARERLGELESRAQVAREAAAFARRVLSLGREAEILSLEGAIAQRLQQLQC
CPWMPGPAPCLLPQLELHPGLLDKNRQLLRLSFEEQQPQKDSGKDGTRSQGGDETQPQSR
DGGQTPEQDSAQPPQEDGAQTLKAERAETPQEDGAQTPKEGRAQTPQEDGGTQSPRGGRS
NKKRKFKGRLKSVSREPSPAPGPNLEGSGLLPRPIFFCSFPTRMPGDKRSPRITGLCPFG
SREILVADEQNRALKRFSLNGDYKGAVPVPDGCSPCSVATLQDAVAFSAGARLYLIRPNG
EVQWRRALSLCQASHAVAAMPSGDRVAVSVSGHVEVYNMEGSLATRFIPGGKASRGLRAL
VFLTASPQGNFVGSDWQQNSLVVCDGLGQVIGEYRGPGLHGCQPGSVSVDKKGYIFLTLR
EVNKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGRYLVVSLSNGTIHVFRVRPPDS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagggaggagggaggcggctctttatctcaagagaccggaagaagattcctgg
ccattcagaatggtttcccagggctcctcaccctccctgctggaggccctgagcagcgac
ttcctagcctgtaaaatctgcctggagcagctgcgggtgcccaaaacgttgccctgcctg
catacctactgccaggactgcctggcccagttggccgagggcagccacctccgatgccct
gagtgccgtgagtccgtgcctgtgccgcccacgggcgtggctgccttcaagaccaacttc
tttgtcaacgggctcctggatttggtgaaggcccgagccggtggagacctgcgcgcaggg
aagccggcctgtgcactgtgcccgctgatgggaggcgccagcgccggggggccagccaca
gcccggtgcctggactgcgccgacgacttgtgccaggcctgtgccgatgggcaccgctgc
actcggcagacccacagccaccgagtggtggacctggtgggctacagggcagggtggtac
gacgaggaggcccgggagcgccaggcggcccagtgtccccagcacccgggggagtccctg
cgcttcctttgccagccctgctcccagctgctgtgccgggagtgtcgcctggacccccac
ctggaccacccctgcctgcccctggccgaggctgtgcgtgcccggaggccaggcctcgag
gggctactggcgggcatggacagcaacctggccaagctggaggccacccggctggcggaa
gaggaagccttggcctgtctgcgggagcaggcagccaaggtgggcacgcaggtggaagag
gcggccgagggggtcctccgggccctcctggcccagaagcaggaggtgctggggcagcta
cgggcccacgtggaggctgccgaggaggctgcacgggagaggctgggggagctggagagc
cgggcacaggtggccagggaggcggcggcctttgcccgtcgcgtgctcagcctgggtcgg
gaggccgagatactctcgctggagggggcaattgcccaaaggcttcagcagctgcagtgt
tgtccctggatgcctgggccagccccctgcctgctgccccagctggagctccatcctgga
cttctggacaagaaccgccagctgctaaggctctcctttgaggagcagcagccccagaag
gacagcgggaaagacggaaccagaagccagggaggcgatgaaacccagccccagagcagg
gacggaggccagaccccagagcaggacagcgcgcagccaccccaggaagatggagcccag
accctaaaggcggagagagccgagactccccaagaagatggagcccagaccccgaaagag
ggcagagcccagacaccccaggaagatggaggaacccagtccccaaggggtggcagatcc
aacaagaagaggaaattcaaaggcaggctcaagtccgtttcccgggagcccagcccagca
cctgggccgaacctggagggctctggcctcctccccaggcccatctttttctgcagcttc
cccacgcggatgccgggggacaagcggtctccccggatcaccgggctctgtccctttggc
tcccgggagatcctggtggcagatgagcagaacagggccctgaagcgcttctccctcaat
ggcgactacaagggcgcggtgcccgtccctgacggctgctccccatgcagcgtggccacc
ctgcaggacgccgtggccttctcggctggcgctcggctctatctcatccgccccaatggc
gaggtgcagtggcgccgggcgctcagcctctgccaggccagccacgccgtggccgccatg
ccgagcggggaccgggtggccgtcagcgtgtcaggccatgtggaggtgtacaacatggaa
ggcagcctggccacccggtttatccctgggggcaaggccagccggggcctgcgggcacta
gtgttcctgaccgccagcccccagggcaatttcgtggggtcagattggcagcagaatagc
ttggtggtctgtgacgggctgggccaggtgatcggggaataccgggggccgggcctgcac
ggctgccagccaggctctgtgtccgtggataagaagggctacatctttctgacccttcga
gaggtcaacaaggtggtgatcctcgatccgaaggggtcgctgctcggtgacttcctgacg
gcctatcacggcctggaaaagccccgggtgaccaccatggtggatggcaggtacctggtt
gtgtccctcagtaatgggaccatccatgtctttcgggtccgccctcctgacagttaa
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integrated database retrieval system
