Lipotes vexillifer (Yangtze River dolphin): 103070845
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Entry
103070845 CDS
T03090
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103070845 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103070845 (SKIV2L)
Enzymes [BR:
lve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103070845 (SKIV2L)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103070845 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
103070845 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
103070845
NCBI-ProteinID:
XP_007459594
UniProt:
A0A340XK15
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MMETERIVLPPPDPLDLPLRALELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPEDHPAPAPGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRRD
TASASPCSAPLARASSLENLVLQEASTAVAPPEPPKPPPQEQWAIPVDVTSPVDDFYRLI
PQPAFRWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHHLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEARKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSTRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQTLAELTKRLGALEEPDVTGQLADLLEYYSYGEELTETRSLIQRRIIGSVNGLKSLS
AGRVVIVKNQKHRNALGVILQVSSSSTSRVFTTLVLCDKPMSEDPQERGPASLVVPYPDD
LVGFKLFLPEGPCGHTVAKLQPGDVAAITTKVLRLNGEKILEDFSKRQQPKFKKEPPSAA
TTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEAGLRVRKLEELIRGAQCVHSLRF
PAQYLKLRERMQIQEEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGQV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPSDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGQLNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgaatcgtgctacctcccccagatcctctggacctgccccttcgg
gccttggagctgggatgcacagggcgttgggagctgctgaatgtgcctggggctccagag
agcaccctacctcacggcctccctccctgtgccccagatctgcagcaagaagcagagcag
ttgtttctgtcatctcccgcctggctgcctctgcacggtgtggaacactcagcccgaaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcggccacgacctccttgtctcttcgccggccacccgggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccagggggaatggat
gagcccaccataacagatctgagcactcgagaggaggctgaggaggagatagactttgag
aaagatcttcttactgttccacctggcttcaagaaaggcgtggactttgcaccagaggat
cacccagcgccagcccccggcttgctcagcctcagccgcctgctggagcccctggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagccaggcggtcccagacgggac
actgcttcagcctctccctgcagtgctcccctggcccgagcaagcagcttggagaaccta
gtgttgcaggaagcgtccacagctgtagctcccccagagcctcccaagcccccccctcag
gagcagtgggccattcccgtggatgtcacctcccctgtcgatgatttctaccgactcatt
ccccagccagccttccggtgggcgtttgagccagatgtgtttcagaaacaggccatccta
cacttggaacggcatgactcggtctttgtcgcggctcacacgtccgcggggaagacggtt
gtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggatgtg
ggacttctcaccggggacgtgcagctgcacccagaggcctcttgcctgattatgacaaca
gagatccttcgctccatgctatacagtggctcggatgtcatccgagacctggagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgcggggtcgtgtgggaggaggtg
ctcatcatgcttcctgaccacgtctccatcatccttctgagtgctaccgtccccaacgcc
cttgaatttgctgactggattggacggctgaagcgtcgccagatctatgtgatcagcact
gttgctcgcccagtccccctggagcatcatctcttcacggggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgaggcaccttccacacaaaggggtactatgcg
gctgtggaggccaggaaggagcggatgagcaaacacgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcacaggaccgtggcgtgtacctgtccctcctggcctcc
ctccgcacccgtgcgcagctgcccgtggtggtgttcaccttctcccgtggccgctgtgat
gagcaggcctcgggcctcacctcccttgacctcaccacgagttcagagaagagtgagatt
cacctcttcctgcagcgctgcctcgctcgcctccgaggctctgaccgccagctgccccag
gttctgcacatgtctgaactcctgcaccgcggcctgggtgtgcaccacagcggcattctg
cccatcctcaaggagatcgtggagatgcttttcagccgaggcctggtcaaggtcttgttt
gccacggagaccttcgccatgggtgtaaatatgccagcccggacagtggtgtttgactcc
acgcgtaagcacgatggctccaccttccgggacctgctccctggggagtatgtgcagatg
gcaggccgggcgggccggaggggcctggaccccacaggcaccgtcatcctgctctgcaag
ggccgtgtgcccgagatggcggacctgcaccgcatgatgatggggaagccgtcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccgtcccgcaaggacagtaag
gcccatgaacagactctggctgagctgaccaagcggctgggggccttggaggagcctgat
gtaactggccaactcgctgacctgctggagtattacagctacggggaggaactgacagag
acccggagcctgatccagcgacgcatcatagggtctgtgaatgggctgaaatctctctca
gcgggaagggtggtgattgtgaagaatcagaagcatcgcaatgcactgggtgtgatcctt
caggtctcctcgagctccaccagcagagtattcacgactctggtcttgtgtgataagccc
atgtctgaggacccgcaggagagggggccagcctccctggttgtgccctacccagatgac
ctcgtgggattcaagctgttcctgcctgaagggccctgtggccacactgtggccaagctc
cagccaggagatgtggctgccatcaccaccaaggtgctccggctgaatggggagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaagaaggagcctccctctgcggcc
acgacaactgcagtccaggaactactacgtctggctcaggcccacccagcaggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtatcggtggtagaggcggggctc
cgggtccggaagctggaggagctgatccggggggctcagtgtgtacacagtctccgtttc
cctgcccagtacctgaagctgcgggagcggatgcagatacaggaggagatggagcggctg
cgctttctgctgtcggatcagtcgcttctgctgctccctgagtaccaccagcgagtagag
gtgctccgaaccctggggtacgtagatgaagtgggcaccgtgaagctggcagggcaggtg
gcttgtgccatgagcagccatgagctgctcctcactgaactcatgtttgacaacgcgctg
agcgcccttcggcccgaggagatcgcggccctgctctccggcctggtctgccagagcccc
ggggaccctagtgatcagctcccaagcaccctcaaacagggggtggaacgtgtccgggct
gtggccaagcggatcggtgaggtgcaggtggcctgtggcttgaaccagacagtggaggaa
tttgtgggacagctgaattttggcctggtcgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcagggacccccgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcgcttcggggggcggcccgcctggtgggcgagcct
gtgctaggtgccaagatggagacggcagccaccctgctacggagggacatcgtctttgca
gccagcctctacacccagtga
DBGET
integrated database retrieval system
