Lipotes vexillifer (Yangtze River dolphin): 103071281
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Entry
103071281 CDS
T03090
Symbol
COL6A3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04151
PI3K-Akt signaling pathway
lve04510
Focal adhesion
lve04512
ECM-receptor interaction
lve04518
Integrin signaling
lve04820
Cytoskeleton in muscle cells
lve04974
Protein digestion and absorption
lve05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
103071281 (COL6A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103071281 (COL6A3)
04518 Integrin signaling
103071281 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103071281 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103071281 (COL6A3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103071281 (COL6A3)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
103071281 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lve04147
]
103071281 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
lve00536
]
103071281 (COL6A3)
Exosome [BR:
lve04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103071281 (COL6A3)
Glycosaminoglycan binding proteins [BR:
lve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103071281 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
103071281 (COL6A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
103071281
NCBI-ProteinID:
XP_007452971
UniProt:
A0A340WVD3
LinkDB
All DBs
Position
Unknown
AA seq
2962 aa
AA seq
DB search
MGKHRHLPLVAIFCLFFSGFSFTRAQQQAAQDSADIIFLIDGSNNTGSVNFAVIRDFLVN
LLERLSVGTQQIQVGVVQYSDEPRTLFSLNSYSTKAQVLDAVKALGFIGGELANVGLALD
FVLENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRDAVIALKQASVFSFGLGAQAASKA
ELQHIATNDNLVFTVPEFHSFGLVQEQLLPYIVGVAQRHIVLQPPTIVTQVIEINKRDII
FLVDGSSALGPVSFNAIRDFVAKVIQRLEIGQDYIQVAVAQYADTVRPEFYFNTYPTKRE
VITAVRKMKPMDGSALYTGSALDFVRNNLFMEAAGYRAAEGVPKLLVLITGGKSLDEVSQ
PAQELKRSGIMAFAVGNKVANRAELEEIAFDSSLVFIPAEFRAAPLQGVLPGLLAPLRTL
SGTTEVHVNKRDIIFLLDGSFNVGKTNFPYVRDFVMNIVNSLDVGSDHIRVGLVQFSDTP
VTEFSLNTYQTKSDLLARLRQLQLKGGLGLNTGAALSYVHDSHFTEAGGSRIRDRVPQLL
LLFTAGQSEDSYLQAANALARAGILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPA
LPQQLIQPLTTYVSGGVEEVPLAQPESKRDVLFLFDGSANLVGQFPAVRDLLYKVIDELD
VRPDRTRIAVAQYSDDVRVESRFDEHQNKPEILNLVKRMKIKTGKALNLGYALDYAQRYI
FVKSTGSRVEDGVLQFLVLLVAGRSSDRVDRPALNLKQSGVVPFILQAKNADPAELEQMV
PSPAFILAAESLPKIGDLQPQIVNLLKSVQNGAPAPVSGEKDVVFLIDGSDGVRSGFPLL
KEFVQRVVESLDVGADRVRVAVVQYSDRTRPEFYLNSYMDQQSIVGAIRGLTLLGGPTPN
TGAALDFVLRNILIDSAGSRIAEGVPQLLVVLAAGRSGDDVRGPSVVLKRGGAVPIGIGI
GNADIAEMQTISLIPDFAVAIPTFRQLGTVQQVISERVTQLSREELSRLRASVVPVTSPS
PGVSGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDMTRVAVIQFSEDPRVEFL
XXXXXLNAYSSKDEVQSAVRRLRPKGGRQINIGGALEYVSKNIFKRPLGSRIEEDVPQFL
VLISSGKSDDEVDESAVELKQFGVAPLTIARNADQEQLVKISLSPEYVFSVSTFRELPSL
EQKLLTPITTLTSEQIQQLLASTRYPPPAVESDAADIVFLIDSSDSVRPDGIAHIRDFVS
RIVRRLNIGPNKVRIGVVQFSNDVFPEFYLKTYKSQASVLDAIRRLRFKGGSPLNTGKAL
EFVARNFFVKSAGSRIEDGVPQHLVLFLGGKSQDDVSRYSQVISSSGIVSLGIGDRNIDR
TELQTITNDSRLVFTVREFRELPNIEERVMNSFGPSKVTPAPPGVDMPSPLRPEKKKADI
VFLLDGSINFRRDSFQEVLRFVSEIVDTVYEGGDSIQVGLVQYNSDPTDEFFLKDFSTKQ
QIIDAINKVVYKGGRHANTNVGLEHLRLNHFVPEAGSRLDQRVPQIAFVITGGRSVEDAQ
EASLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGSVQELSELSEQVLETLHDAM
HETLCPGVPDVSKVCNLDVILGFDGSRDQNIFVTQRGFESKMDTILNRISQMQRISCSGS
QLPTVQVSVVANTPSGPVEAFDFAEYQPELFEKFQNMRTQHPYILTADTLKLYQSKFRQA
SPDSVKVVIHFTDGVDGDLADLQRASEELRQEGVRALILVGLERVANLEQLMQLEFGRGF
TYNRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGY
RGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGIKGSRGFPGEKGELGEIGLDGLDGEDGD
KGLPGISGEKGNAGRRGDKGPKGDKGERGDVGIRGDPGNSGRDSQQRGPKGETGDIGPMG
LPGTDGVSGGPGEPGKSGGFGRRGPAGAKGNKGGPGQQGSVGEQGTRGAQGPPGPIGPPG
LIGEQGILGPRGSGGTTGVPGERGRTGPLGRKGEPGDPGPKGSIGNRGPRGETGDDGRDG
VGSEGRRGKKGERGFPGYPGPKGNPGEPGTDGALGPKGIRGRRGNSGPPGIAGQKGDPGY
AGPSGYKGSRGDSMDQCALVQSIKDKCPCCYGPLECPVFPTELAFTLDTSEGVTQDTFSR
MRDVVLKIVDDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKKKSVLQDKIKNLQVAL
TSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNKPTRESPQLREAVLKLSDAGITP
LFLTSQEDRQLVNALQINNTAVGHALVLPASGDLTDFLKKVLTCHICLDICNIDPSCGFG
NWRPSFRDRRAAGSDVDIDMAFILDSSESTTLFQFNEMRKYIQYLVQQLDMSPDPKASQH
FARVAVVQHAPYESAGNASVPPVKVEFSLTDYGSKEKLLAFLGSRMAQLQGTRALGSAID
YTIENIFESAPNPRDLKLVVLMLTGEVQNQQLQEAQRAILQAKCKGYFFVILGIGRKVNV
KELYSFASEPNDIFFKLMDKSTELSEEPLMRFGRLLPSFISSKDAFYLSPDIRKQCDWFQ
ADQPAKNLVQFGYKQINVPNNVTSSPTSKPVTTAKPVTTTTKPITVVNLPASKPASTRPV
AEKPVAGRPMATKPEAVSKTATVRPALAARPAAAKPAPARPPAAAKPMAAKPEAPRPQAA
KLAATRPATAKPMVKAPREVHASEITENSVKLHWERPEPPSPYLYNLTITSAHDQSPVLK
QNLTVTDHVIGGLLPGQTYHVTVICYLRSQVRAIYQGSFSTKKIQPPSPHTARSVSSSTI
NLVVSAERLAGSKTDICKLPKDEGTCRDFILKWYYDSVTESCARFWYGGCGGNENRFDSQ
DECEKVCPPVLIKPGVIAAIGT
NT seq
8889 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcaccggcatttgcctttagtggccatcttttgcctttttttctcaggcttt
tcctttactcgtgcacaacaacaagcagcacaagactctgctgacattattttcctaatt
gatggatcaaacaacaccggaagtgtcaatttcgcagtcattcgcgacttccttgtaaat
ctccttgagagactctcagttggaactcagcagatccaagtgggggtggtccagtatagc
gatgagcccagaacgctgttctccttaaacagctattccaccaaggctcaggttctggac
gcagtgaaagccctggggttcatcggtggggagttggccaatgtcggcctggcccttgat
tttgtgctggagaatcacttcacccgggcagggggcagccgagtggaggaaggggttccc
caggtgctggtcctcataagtgctgggccttctagtgatgaaatccgagacgcggtcata
gcactgaagcaggctagcgttttctcgtttggcctcggagcccaggccgcctccaaggca
gagcttcagcacatagctaccaatgacaacttggtgtttactgtcccggaattccatagc
tttgggctcgtccaggagcaattactgccgtacattgttggcgtggcccaaaggcacatt
gtcttgcaaccgccaaccattgtcacccaagtcattgaaatcaacaagagggacataatt
ttcctggtggatggctcttctgccctgggaccggtcagcttcaacgcaatccgcgacttc
gttgccaaggtcatccagaggctggagatcggacaggattatatccaagtggcagtggct
cagtatgcagacacagtgaggccggagttttatttcaatacctaccccaccaagagggag
gtcataaccgccgtgaggaagatgaagcccatggatggctcggccttgtacacaggctct
gctctggactttgttcggaacaatctgttcatggaggcggccggctatcgggccgccgag
ggggtccctaagcttttggtgctgattacaggtggtaagtccttagatgaagtcagccag
cctgcccaggagctgaagagaagcggcatcatggcctttgccgtcgggaacaaggtggcc
aaccgggctgagctggaagagatcgctttcgattcctccctggtgttcattcctgccgag
ttccgagccgcccctttgcagggtgtgctgcctggcttgctggcgcctctcaggaccctc
tctggaaccactgaagttcacgtaaacaaaagggatatcatctttcttttggatggatcg
ttcaacgttggaaagaccaatttcccttatgtgcgggactttgtcatgaatatagttaac
agccttgatgttggaagcgaccatattcgtgtcggtttagtgcaatttagtgacactccg
gtgacggagttctctctaaacacctaccagaccaagtcagatttgctagctcgcctgagg
cagctgcagctcaaggggggtttgggcctgaacacgggcgcagccctaagctatgtccat
gacagccacttcaccgaagctggcggcagcaggatccgggaccgtgtgccgcaactcctg
ctcttgttcacagccgggcagtctgaggactcctatttgcaagccgccaacgccctagca
cgcgcaggcatcctgaccttttgtgtgggcgctagccaggccaataaggcagagcttgag
cagattgcttttaacccgagcctggtgtatctcatggatgatttcagctccctgcctgct
ttgcctcagcagctgattcagcccctaaccacttatgttagtggaggtgtggaggaagtc
ccactcgcccagccagagagcaagcgagacgtcctgttcctctttgatggctcggccaac
ctcgtgggccagtttcctgctgtccgtgacctcctctacaaggtcattgatgagctggac
gtgagacctgacaggacccggattgcggtggctcagtacagcgatgatgtcagggtggag
tcccgttttgatgagcaccagaacaagcccgagatcctgaatctcgtgaagagaatgaag
atcaagacaggcaaagccctcaacctgggctatgccctggactatgcgcagaggtacatc
tttgtgaagtccactggaagccgggttgaggatggagtgcttcagttcctggtgctgctg
gtggcgggaaggtcatccgatcgtgtggacaggccagctctgaacctgaaacagagcgga
gtggtgcccttcatcctccaggccaagaatgcagaccctgccgaattggagcagatggta
ccgtcccccgcctttatcctggctgcggagtcacttcccaagattggagaccttcaacca
cagattgtaaacctcttaaaatcggtgcaaaatggggcgccagcaccagtttcaggtgaa
aaggatgtggtgtttctgatcgacggctccgacggtgtcaggagcggcttcccgctgttg
aaagagtttgtccagagagtggtggagagcctggacgtgggtgcggaccgggtgcgcgta
gctgtggtgcagtacagtgaccggaccaggcccgagttctacctgaattcctacatggac
cagcagagcatcgtcggtgccatccgcgggctgacgctgctgggcgggccaacccccaac
accggggccgccctggacttcgtcctgaggaacatcctgattgactccgccgggagccgc
atagcagaaggcgtcccccagctcctggtcgtcctcgcggccggcaggtctggggatgat
gtgagaggcccctcggtggtcctgaagaggggaggggccgtgcccatcggcatcggcatc
gggaacgctgacatcgccgagatgcagaccatctccctcatcccggacttcgcagtggcc
attcccaccttccggcagctggggaccgtccaacaggtcatctccgagagagtgacccag
ctcagccgcgaggagctgagcaggttgcgggcatccgtggtccctgtaacgagcccgagc
ccgggtgtcagcggcaagagggatgtggtctttctcatcgatgggtcccaaagcgccggc
cccgagtttcagtacgtccgtaccctcatcgagaggctggttgactacctggatgtgggc
ttcgacatgacccgggtggcggtcatccagttcagcgaggaccccagggtggagttcctg
tnnnnnnnnnnnntgctgaacgcctactccagcaaggatgaggtgcagagcgcggtgagg
cggctgcggcccaaaggcgggaggcagatcaacattgggggtgccctggagtacgtgtca
aagaatatcttcaagaggcctctggggagccggattgaagaagatgtccctcagttcctg
gtcctcatttcttccgggaagtctgatgatgaggtagatgaatcggcagtagagctcaag
cagtttggcgtggcgccactaacaatcgcaaggaacgcagaccaggagcagttggtgaag
atctccctgagccctgaatacgtgttctcagtgagcaccttccgggagctgcccagcctg
gagcagaaactgctgacacccatcacaaccctaacctccgagcagattcagcaactcctg
gccagcacgcgctaccctcctccagctgtggagagtgatgctgcagacatcgtcttccta
atcgacagctctgacagtgtgaggccggacggcattgcacacattcgggactttgttagc
aggatcgtgcggagacttaacattggccctaataaagtgagaattggggtcgtgcagttc
agcaatgatgtcttcccagagttttacctgaagacctataaatcccaggccagtgtgctg
gatgccatacgtcgcctgaggttcaaaggggggtctccgctgaacactggcaaagctctg
gaattcgtggcaaggaatttctttgtcaagtctgccgggagccggatagaagacggggtg
ccccaacacctggttctgtttctgggtggcaaatcccaggacgatgtttccaggtattcc
caggtgataagctcctcggggattgtgagtttagggataggagaccgaaacatcgacaga
acggagctgcagaccatcaccaatgactccaggctagtcttcacggttcgggagttcaga
gagctccccaacatagaagaaagggtcatgaactcctttggaccctccaaggtcaccccc
gcgcctccgggagtggacatgccctctcccttacggccagagaaaaagaaagcagacatc
gtgttcctgttggatggttccatcaatttccggagggacagtttccaggaagtgctccgt
tttgtgtctgaaattgtggacacggtttatgaagggggagactccatccaagtggggctg
gtccagtacaactctgaccccaccgacgaattctttctgaaggacttttccaccaagcag
cagattattgatgccatcaacaaggtggtctacaaaggggggaggcacgcaaacaccaac
gtgggcctggagcacctgcgtctgaatcacttcgtgccagaggcaggcagccgcctggat
cagagagtcccgcagattgcctttgtgatcaccggaggaaggtcggtggaggatgcccag
gaggcaagcctggcactcacccagagaggcgtcaaagtgttcgcggtgggcgtgaggaac
atcgactcagaggaggttgggaagatcgcgtccaacagtgccacggcgttccgggtgggg
agcgtccaggagctgtcggaattgagcgagcaggttttggaaactctgcatgacgcgatg
catgaaaccttatgtcctggtgtgcctgatgtttccaaagtctgtaacctggatgtgatt
ctgggctttgatggttcaagagatcagaacatatttgtgactcagaggggctttgagtcc
aagatggacacaattctgaatagaatcagccagatgcaaagaatcagctgcagtggcagc
cagctgcccacggtgcaggtgtccgtggtggccaacacgccctcaggccccgtggaggcc
tttgactttgctgagtaccagccagagctgtttgagaagttccagaacatgcgcacccag
cacccctacatcctcactgcggacacgctgaagctctaccagagcaagttccggcaggcc
tcgccagacagtgtgaaggtggtcattcattttactgatggggtggatggagatctggct
gacttacaaagagcatcggaggaactccgacaagaaggcgtccgagctctgatcttggtg
ggccttgaacgtgtcgccaacttggagcagctgatgcagctggagttcgggcgaggattc
acgtacaaccggcccctgagactgaacttgctggacctagactatgaactagcggagcaa
cttgacaacattgccgagaaagcctgctgtggggttccctgcaaatgctctggacaaaga
ggagaccgagggcccattggcagcattgggccgaagggtattcctggagaagacggctat
cgaggttatcctggtgacgagggtggacctggtgagcgcggcccgcctggtgtgaacggc
actcaaggtttccagggctgccccggacagaggggcataaagggctctcgtggattccca
ggagagaagggtgaattaggagaaattggacttgatggtcttgatggtgaagatggagac
aaaggattgcctggtatttctggagagaaagggaatgcaggaagaaggggtgacaaagga
cccaaaggagacaaaggagaaagaggggatgttgggatcagaggtgacccgggtaactca
ggacgggacagccagcagagaggacccaaaggagaaaccggagacatcggccccatgggt
ctccctgggacagatggggtgtctggcgggcctggagaacccgggaaaagcggcggcttt
ggccgaaggggaccagcaggggctaagggcaacaagggcggtcccggccagcagggctct
gtgggagagcaggggaccagaggtgcacagggtcctcctggtcccatcggtcctccaggc
ctgatcggtgaacaaggcattctcggacctcggggaagcggggggaccacaggtgtacct
ggagaacgtggcagaaccggacccctgggaagaaagggcgagcccggagatccaggaccc
aaaggaagcatcgggaaccggggccctcgtggggagacgggagatgacggacgagatgga
gttggcagtgaaggacgcagaggcaaaaaaggagaaagaggatttcccggatacccagga
ccaaagggcaatcctggtgagccggggacagacggagccctgggacccaaaggcatcaga
ggccgaagaggaaattcaggacctccagggatagctggacagaagggagaccctggttat
gcaggaccatctggttacaaaggcagcagaggcgactcgatggaccaatgtgccctggtc
cagagcatcaaagataaatgtccttgctgctacgggcccctggaatgccctgtcttcccg
acggagctggccttcaccttggacacctctgagggggtcacccaggacacgttcagccgg
atgagggatgtggtcctgaagatcgtggacgacctgaccatcgccgagagcaactgcccg
cggggcgcccgcgtggccgtggtcacctacaacaatgaggtcaccacggagatccgcttt
gctgactccaagaagaagtctgttctccaggacaagatcaagaaccttcaggtggctctg
acgtccaagcaacagagtctggaaactgccatgtccttcgtggccagaaacacgtttaag
cgggtacggaatggattcctgatgaggaaggtggctgttttcttcagcaataagcccacg
agggagtccccgcagctcagggaggccgtgctcaagctctcggatgctgggatcacacca
ctgttcctcacgagccaggaggaccggcagctggtcaacgccctgcagatcaataacaca
gcagtgggtcatgcccttgtcctaccagctagtggagacctcacggacttcttgaagaaa
gtcctgacttgtcacatttgcttggacatctgcaacatcgacccatcctgtggatttggc
aactggaggccttccttcagggaccggagagcagcgggcagcgacgtggatatcgacatg
gctttcatcttagatagctccgagtccaccactctgttccagttcaacgagatgaggaag
tacatacagtacctggtccaacagctggacatgagcccggaccccaaggcctcccagcac
tttgccagagtggcggtcgtgcagcatgcaccctatgagtccgcgggcaacgccagcgtg
ccgcccgtgaaggtggaattctcgctgactgactacggctccaaggagaagctcctggcc
ttcctcggcagcaggatggcacagctccaggggaccagggctttgggcagtgccatcgac
tataccattgagaacatctttgaaagtgcacccaacccacgggacctgaagctcgtggtc
ctgatgctgacgggcgaggtgcagaaccagcagctgcaggaggcccagagagccatcctg
caggccaaatgcaagggttacttctttgtgatcctgggcattggtaggaaggtgaacgtc
aaggagctgtacagctttgccagtgaaccaaacgacatcttcttcaagctcatggacaag
tctactgagctcagcgaagagcctctgatgcgcttcgggaggctgttgccatccttcatc
agcagtaaagatgctttttacctgtccccagatatcaggaaacagtgtgattggttccaa
gcggaccaaccggcaaagaatcttgtgcagtttggttacaaacaaataaatgttccgaat
aatgttacttcaagtcctacatctaaaccagtgaccacagcaaagccagtgaccaccacc
accaaaccaataacagtggtaaacctgccggcctcaaagccagcttccacgagacctgtg
gccgagaaacccgtggctgggagacccatggccaccaagcctgaggctgtttcgaagaca
gccacagttagacccgcactggccgcgaggcccgcagcagcaaagccggcccctgccaga
ccccctgctgctgccaaacccatggctgcaaaacctgaggcccccaggccccaggcagcc
aaactggccgccaccaggccagccactgctaagcccatggttaaggcaccccgagaggtc
cacgcgtctgaaatcacagagaacagcgtcaaactccactgggagaggcccgagcccccc
agcccttatttatacaacctcaccatcacctcggcccacgatcagtccccggttctgaag
cagaacctcacggtcacggaccacgtcatcgggggcctgctccctgggcagacgtaccat
gtcacggtgatctgttacctaaggtctcaggtcagagccatctaccaaggcagtttcagt
acaaagaaaattcagcctccatctccacacacggcaaggtcagtttctagttcaaccatc
aatctagtggtgagtgcagaacggctggctgggagtaaaacagatatatgtaagttgcca
aaagacgaaggaacttgcagggactttatattaaaatggtactatgactccgttactgaa
agctgcgccagattctggtatggaggctgtggtggaaatgaaaacagatttgattcgcag
gatgaatgtgaaaaggtttgccctcctgtgctcatcaagcccggagtcatcgctgcgatt
gggacctaa
DBGET
integrated database retrieval system
