Lipotes vexillifer (Yangtze River dolphin): 103075508
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Entry
103075508 CDS
T03090
Name
(RefSeq) spatacsin-like
KO
K19026
spatacsin
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve05014
Amyotrophic lateral sclerosis
lve05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
103075508
05022 Pathways of neurodegeneration - multiple diseases
103075508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lve03400
]
103075508
DNA repair and recombination proteins [BR:
lve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
103075508
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
103075508
NCBI-ProteinID:
XP_007467587
UniProt:
A0A340Y5F2
LinkDB
All DBs
Position
Unknown
AA seq
1965 aa
AA seq
DB search
LIEDGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLD
TVDFFLKSKENLLSPSSKSSVPDQFDHFPSHLYLKYVEELTPALDLLCSAIRENDSETQS
KHFSEQLLNLTLSFLNKQIKELFIHNEGLDEHLQKGVNILTSYINELRTFMIKFPWKLTD
AIDEYDVNENVPKVKESNIWEKLSIEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIR
IGLDLVFDNLKKNNIKEASELLKNMGFNVKDQLLKICFYTTDKNIRDFLVEILKEKNYFS
EKEKRTIDFVHQVEKFYSGHFQENMQIQSFPRYSIKEQDFFKHKSVLDSFLKYDHKDTDK
LNKQDHRIVLTWAQWWNQLTQESILLPRISPEEYKSYSPEALWRYLTARHDWFSIILWIG
EFQTRNSYASLQQNKWPPLTVDVVDQNTRCNNYMRNEILDTLARNGIFLTSELEDFELFL
KRLNRIGGVMQDTLPVQNYRSKDGWDFHCHFILYCLEHSLQYLLYVFLDYYKLSPPNCPF
LEKKELHEAHPWFEFLVQCRQVSSNLTDPKLIFQASLANAQILIPSNQASVSSMLLEGHT
LLALATTMYAPGGVSQVVQNEENENCVKKVDPQLLKMALTPYPKLKTALFPQYTAPSVLP
PDITLYHLIQSLLPFDPSRLFGWQSANTLTIGDAASQLPHFSSPDLVNKYAIVERLNFAY
YLHHGRPSFAFGTFLVQELTKSKTPKQLIQQVGNEAYVLGLSSFHIPSIGAACVCFLELL
GLDSLKLRVDMKVANIILSYMCRNEDAQYNFIRESLAEKLSKLAMGEKSTIEELLVLLEE
GIRDSIQQQEIKRLSSESSSQWALVVQFCRLHNLKLSTSYLRECAKANDWLQFIIHSQLH
NYHPEEVKSLLQYFNPVLQDHLRLAFENLPSASKSRMDSDQVCNKSPQELQRNKVEMTDF
FEILLQCSEVPNSWCWLLAEAVKQQAPILSVLASCVQDASAIPCLCVWIITSVEHSVAAE
AMGHIQDSMEGHTWDLEDLSVIWRTLLTRQKSKTLIRGFQLFFKESPLLFMMEMYELCMF
FKNYEEAEAKLLAFRKSLETLETAATRVHAIIPAPWLKENVYFLLKLMLQQCRTQYELGK
LLQLFVGIEHLFCDGPDVKKLCVLSQILKDTSIAINRVIITSYSLENLQHECRSILEKLE
TDGYFALARRVAELAELPVDNLVIEEITQEMQTLKHIDQWSLKQARIDFWKKCHENFKKN
SISSKAASSFFSAQALTASECPAEEGPSSTEERHLLLTLAGHWLAQEDLVPLKELEELEK
QIWLCRITQHTLRGSQEKIAPRCSQQMSTSGELSFESLASEFSFSKLAALNTSKYLEFNG
LPSKDTCENKLNWKQQESLNFLIGRLLDDGCVHEASRVCRYFHFYNQDVALVLHCRALAS
GEASVDDLHPDVHALLQSAELLEEEEEPGFPLRKVQSTSSLDSQSFVMLPPSDEVVTILE
TLTSRCLHGKNYCQQVLCLYALAKELGCSYTDVAAQDGEAILRVILASQQPDRCKRAQAF
ISTQGLEPDTVAELVAEEVTRELLTPSEGTGYKQTFTPTEESQTFLQLTALCQDRTLVGM
KLLDKISSVPHGDLSCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPSEEYGL
VVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKH
NMIALCFSMCREIGENHEAAACIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAES
YAKDSCVRQALHCHRLTKLITLQIHFLNTGQNTMLINLGRHRLMDCIMALPRFYQASIVA
EAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLRSSIFEEISIKCKHHQPTDLVVKNL
KKLLTYCEDVYLYYKLAYEHKFYDVVNVLLKDPQTGCCLKDMLAG
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
cttatagaagatggactctctctgattttgtttggtttgactcaagaggaatttttaaat
agactaatgatccatggaagtgccagcactgtggactctctttgccatctcaatggttgg
gggaggtgctccatccccatacatgcactagaggcaggaatagaaaatcgtcagctggac
acagtagatttctttttgaagagcaaggaaaatcttttgagtccatcctcaaaatcttct
gtacctgatcagtttgatcactttccatcccatttatatttaaaatatgtcgaagagctg
acaccagcattggatttactttgctcagcaattagagaaaatgattctgaaacccagagc
aaacacttttcggaacagttgcttaatcttacactgtctttccttaacaaacaaataaag
gagctttttattcacaatgaagggctagatgaacatctacagaaaggagtgaacattttg
accagctacattaatgaacttcgaaccttcatgataaagtttccttggaagctaacagat
gctatagatgaatatgatgtaaatgaaaatgtccccaaagtaaaggagagcaatatatgg
gagaagctcagcattgaggaagttattgccaatgccattttaaacaacaaaataccagag
gcacaaactttcttcaggattaacagtcattctgctcaaagactcgaggagttgattaga
ataggcctagatttggtctttgacaatttgaaaaagaataatataaaggaagcctctgag
cttttgaagaatatgggctttaatgtaaaagaccagttgctcaagatatgcttctataca
actgataaaaacatacgggactttttggttgaaattttaaaagaaaaaaattatttttct
gaaaaagaaaaaagaactatagacttcgtgcatcaagttgagaagttttattcaggacat
ttccaagaaaatatgcagatccagtcttttcccaggtattcgataaaggaacaagatttt
ttcaagcacaagtctgttttggactcattcctgaaatatgatcataaagatacagataaa
cttaacaagcaagatcacagaattgtgttaacttgggctcagtggtggaatcaactaaca
caagaatccatccttctccccaggataagtccagaagaatacaaatcatattctcccgaa
gccctctggagatacctcacagctcgccatgattggttcagcattatcttgtggattgga
gaatttcagacccggaatagttatgcctcacttcagcagaacaaatggccccctctgact
gttgacgttgttgatcagaatactcgctgcaacaactacatgaggaatgaaattttagat
acgctggccaggaatggaatttttcttacatctgaactagaagactttgaactctttctc
aaaagactgaatcgtattgggggagttatgcaagataccctccctgttcaaaactatagg
tccaaagatggttgggatttccattgtcacttcattctctattgtttggaacacagtctg
cagtatcttctttatgtctttcttgactattacaaacttagtcctccaaattgtcccttt
ttggaaaaaaaagaattacatgaagctcacccttggtttgaatttttagttcagtgtcga
caagtttccagtaatttaacagatcccaaactgatcttccaggctagccttgcaaatgct
cagatactgattcccagcaaccaggccagtgtaagcagtatgctattggaaggacatacc
ctcctggcccttgctaccacaatgtatgcccctgggggcgtcagccaggttgttcagaat
gaagaaaatgagaactgtgtgaagaaagtagatccccagctactgaagatggcattaact
ccttaccccaagcttaaaactgctctcttcccacagtacactgcccctagtgtcctgcca
ccagatattacactctaccacctgattcagtcattattgccctttgatcctagcagattg
tttggctggcagtctgccaacacactgactataggagatgcagcaagtcagctcccacat
ttctctagccctgacctggttaataaatatgctatagtagaacgtctgaattttgcttat
tatttacatcatggacgaccatcgtttgcgtttggtacttttctggttcaggaattaacc
aagagcaagacccccaagcagctgatccagcaagtaggcaatgaagcctatgttttaggg
ctctcctccttccacataccttcaataggagctgcctgtgtttgtttcttagaactgctt
ggcctcgacagcctcaagctcagagttgatatgaaagtggccaatataattttgagctac
atgtgtagaaatgaagatgctcagtacaactttatcagagagtctctagctgaaaaacta
tctaaactggctatgggtgaaaagtcaaccatagaagaattgctcgttctcttagaagaa
ggtatacgggacagcattcagcagcaggaaataaagaggttatccagtgaatccagcagc
cagtgggcattagtggtacaattctgcaggctccacaatctgaaactgagcacatcttac
cttagagaatgtgccaaagcaaatgattggttacagtttattattcacagccaactccat
aattaccacccagaggaggtgaaatctcttctccagtatttcaaccctgttcttcaagac
cacttaagactggcttttgagaacttgccctcagcgtccaagtctagaatggacagtgat
caagtctgcaacaagtccccgcaggagctccaaagaaacaaagtagagatgactgatttc
tttgaaattctgcttcagtgctcagaggtgccaaactcctggtgctggctcctggcagaa
gcagtgaaacaacaggccccaatccttagtgtcctggcctcatgtgtccaggacgccagt
gctattccttgcctctgtgtttggatcatcacttctgtggagcacagtgttgcagctgaa
gcaatgggacacattcaggactcaatggagggccatacctgggaccttgaggacctctca
gtcatctggaggacattattaacacggcagaagagcaaaactctcatcagaggtttccag
cttttctttaaggagtccccactactcttcatgatggagatgtatgaactgtgtatgttc
ttcaagaattatgaggaagctgaagctaaacttctggcgttccggaagagccttgaaact
cttgaaacggcagccacaagggtccacgctatcattcctgccccatggctgaaggagaac
gtgtattttcttttgaagcttatgctgcagcagtgtaggacccagtatgagctggggaag
cttttacagctgtttgttggaatagagcatctcttctgtgatggtccagatgtaaagaag
ctgtgtgtccttagccaaattttgaaggatacgtccatagccattaaccgtgtaattatt
accagctacagccttgagaatcttcagcatgaatgtagatcaattttagaaaaactggag
acagatggatactttgctttggccaggagggtagcagagctagctgagctacctgtggac
aacttggttattgaagagataacacaggaaatgcagaccttaaaacacattgaccagtgg
tctctgaaacaagcaagaattgacttctggaaaaaatgtcatgagaattttaagaaaaat
tccatctcaagcaaagcagcttcttcctttttctcagcccaggctcttacggcaagtgag
tgcccagctgaagagggaccaagcagcactgaggagcgccatctgctgctcactctggca
ggacactggcttgcccaggaggacctggtgcctttgaaggagctggaggagctagagaag
cagatctggctctgccgcatcacccagcacaccctcaggggaagccaggagaaaatagct
cccagatgttctcaacagatgtcaactagtggtgaactttcctttgaaagcttagccagt
gagttttcattctctaagttggctgctctgaacacatcaaaatacttagaatttaatggc
cttccatccaaagacacttgtgagaacaaactgaattggaagcagcaggagtccctaaac
tttttgattgggcgcctattggatgatggctgtgtgcatgaagcaagtagagtatgccga
tattttcatttctataaccaagatgttgccttggtgttgcattgcagagcactagcttca
ggggaagctagtgtggatgacctgcacccggacgtccatgctctcttacaaagtgctgag
ctgcttgaggaagaagaagaacctggctttcctctaaggaaagtccaaagcacttcaagt
ttggatagtcagtcatttgtgatgctgccccccagtgatgaagtggtgactattctggaa
actctgacaagcagatgcctccatgggaagaattattgccagcaggtcctctgtctctat
gcacttgccaaggagttgggctgttcctacacagatgtcgctgcccaggatggtgaggcc
attctccgggtaatcttggcctctcagcagcctgaccgatgcaagcgagctcaagccttc
atcagcacccagggcctcgagccagacacagtggctgaacttgtggccgaagaggtgacc
cgggagctgctgaccccatcagagggaacaggatataagcagacgttcaccccaacagag
gaaagccagacgtttcttcagctgactgctctgtgtcaagaccgcaccttggtaggcatg
aagttgttggataagatttcctccgttccccatggggacttgtcttgcaccacagagctg
ctgatcctggctcatcactgcttcacgctgacatgccacatggagggcatcatccgagtc
ctgcaggccgcccggctgctcacagacaaccacttggcccccagtgaggagtatggactg
gtggtgcgtctcctcactggcattggaaggtacaatgagatgacatacatatttgatttg
ctgcataaaaaacactattttgaagtgctgatgaggaagaaattggacccgagtggtacc
ctgaagacggccctactggactacatcaaacgctgccgccctggggacagtgagaagcac
aacatgattgccctgtgtttcagcatgtgccgggagattggggagaaccatgaggcagct
gcctgcatccaactgaaattgattgagtctcagccctgggaggacagcctcaaggatggg
caccaactgaagcagctgctgctgaaggccctgactctgatgctggatgcagcagagagt
tatgccaaggactcctgcgtgcgacaggccctgcactgtcaccggctcaccaagttgata
acactgcagattcactttctgaacaccggccagaacacaatgctcatcaacctgggccgc
cacaggctgatggactgtatcatggccctacctcggttctaccaggcttctattgtggct
gaggcctatgactttgttcctgattgggctgaaattctataccaacaagtgattcttaaa
ggagactttaattacttggaagaatttaagcagcaaaggttattaagatccagtatattt
gaagaaatttcaataaaatgtaaacatcatcagcctactgacttagttgtgaaaaacctg
aagaagttactcacatattgtgaagatgtctacttgtattacaagctggcatacgaacac
aaattttatgacgttgtaaatgtgcttctgaaggaccctcagacaggttgctgtctaaag
gacatgctagcaggttag
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