Lipotes vexillifer (Yangtze River dolphin): 103076402
Help
Entry
103076402 CDS
T03090
Symbol
SCAF4
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor, arginine/serine-rich 15
KO
K13167
SR-related and CTD-associated factor 4
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lve03021
]
103076402 (SCAF4)
03041 Spliceosome [BR:
lve03041
]
103076402 (SCAF4)
Transcription machinery [BR:
lve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103076402 (SCAF4)
Spliceosome [BR:
lve03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
103076402 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
103076402
NCBI-ProteinID:
XP_007447492
UniProt:
A0A340WIX5
LinkDB
All DBs
Position
Unknown
AA seq
1576 aa
AA seq
DB search
MAPVTIVTFFKLPSSLSSELTSDQLTKPFVTADESVCRDSKWMTHILHLDQWMTRYTTEA
THFASAPPLPLLTSSPTCQLLVWCHYGEAGVGKEERRRLDQLSFGWWFHGSGGQVAPSPP
ALTGAGPVWAEWHTKTHRGAPCRAGARVCTGSLRARLLALGPPRSPAPLSGTQKSWEARA
VPACPARRGLGQLPPSRWRGGERGPPACRSGQCGLVREGAGGRVSETQTPPPNGHVGAQG
RRRLFFLILRTGLRGGPPPRRLCLCLGRPPRRLGRSLFLPGLQLRSSSPPPAPQARPVPR
PRSAAARGLCDRRARSSRRRSANMDAVNAFNQEVRGAWNRRVPGLPGSRGVVSPAAGGLK
LRSGWGRFLPRFRGGGACAERPVARGGRGGRGSRPHTPPPPPTPGRRPRAAPLAPFRPPP
ARVGASNFAPFQVRVLSLSAPSPVLASRYREPLFSLMDMKPPISRAKMILITKAAIKAIK
LYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQY
LYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPP
VKVSSEPSQATTNSIPTVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAI
DNAVMAQVQAITAQLKTAPTQPPEQKAAFPQPEQKTAFDKKLLDRFDYDDEPEAVEESKK
EDGAAAATAAAATTAPTAAVAPPAPAAAVPSVAATAASPPQAPFGFPGDGMQQPAYTQHQ
NMDQFQPRMMAIQQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQT
SFQAQSEPLTQKAHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRS
RHRRSRSRSRDRRRHSPRSRSQERRDREKDRERRQKGLPQIKPETASVCSTTLWVGQLDK
RTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDANRALQKLSRGNYKVNQKSIKI
AWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKH
ENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQP
PTFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPH
TPPINIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSCATCCTHESA
HPSCNPACFTSCATLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPLMPPRPMP
PHMMHRGPPPGPGGFGMPPPHGMKGPFPPHGPFVRPGGVPGLGGPGPGPGGPEDRDGRQP
PQQQQQPPPAPQAQQQPPTQPPQPPPTQPQPFRNDNRQQFTSGRDQERFGRRSFGNRVEN
DRERYGNRNDDRENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRRE
KEENRGKEKPEVTDRAGGNKTVEPPVSQVGNVDTVSELDKGESESAVVKPSEELPAEATS
SVEPEKDSGSAAEAPR
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atggcccctgtcaccatcgtcacgttcttcaagctaccatcctctctctcctccgaactg
acctctgatcaactgaccaagccatttgtcactgctgatgagtctgtgtgtagagacagt
aaatggatgacacatattctccatctagaccagtggatgaccaggtacaccaccgaagcc
actcacttcgcttctgctcctcctctgcccctgctcacgtcctccccaacttgccagttg
ttagtgtggtgccactacggtgaagcaggagtggggaaggaggagagaaggcgtctagac
cagctctcatttggctggtggtttcatggcagcggagggcaagtggctccgagtccgcca
gccctgacgggtgcagggcctgtctgggcagaatggcacacaaaaacgcaccggggagcg
ccgtgtcgggcaggggcgcgcgtgtgcactggctctctccgtgccagactcctggccctg
ggacccccgcgctcgccggcgcccctctcgggcacccagaagagctgggaggcccgagcc
gtcccagcgtgccccgcgcggcgtggactcgggcagctgccgccatcccgctggcgaggt
ggagagagaggcccgcccgcttgccggtcgggccagtgtgggctagtgcgtgagggcgcg
gggggccgtgtcagcgagacgcagacgccaccgccaaacggacatgttggagcccagggc
cgccgccgcctctttttcctcatcctccgaacgggactgagagggggcccgccaccccgc
cgcctctgcctgtgcctcggccgcccgccccgccgcctcggccgcagcctcttcctgccc
ggcctccagctccgcagctcatcgcctccgcccgcccctcaggcccggccggttccccgg
ccccgctccgccgcggcgcgaggtctatgtgaccggcgggcccggagcagccgccgccgc
agcgcgaacatggacgccgtcaacgccttcaaccaagaggtaaggggtgcttggaacagg
agggtgccgggcctgccggggagtcggggcgtcgtttctcctgccgccggaggtttaaag
cttaggtcggggtggggacgcttcctgccccggttccggggcggcggggcctgcgcggag
cggcctgtggcccggggaggtcgcggcggccgcgggagccgaccccacacccctccccca
cctcccactcccgggcggcgacctcgggctgcccctctcgcccccttccggcctcctcca
gcccgcgtcggcgcctctaacttcgccccctttcaggtccgggtgctctcgctctctgcc
cccagccccgtattggcttcgcggtaccgggagcccctcttttcacttatggatatgaag
cctcccatctctcgagccaagatgattctcatcacgaaagctgctattaaagctattaag
ctttataagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagaatac
aaggttccgggattatatgtaatcgactcaattgtgagacagtctcgtcatcagtttgga
actgataaagatgtttttgggccaagattctctaaaaacataactgccacattccaatat
ttgtatctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaa
aaaaatggagtattcaaaattgaaatcattcaaccgcttttggacatggcagcaggaacc
agtaatgccgccccagtaacagaaaatgttactaataatgaaggctcacctccacctcca
gttaaagtttcttctgaaccctcacaagccactacaaactccataccaactgtaccacag
ttgcccagctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaa
cagcttcagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgccatt
gacaatgctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctaca
caaccacctgaacaaaaagctgctttcccccaacctgaacaaaaaactgcatttgacaag
aagctacttgatagatttgattacgatgatgagccggaagctgtggaagaatcaaagaaa
gaagatggtgctgccgccgctaccgccgccgctgccaccacagcacctactgctgctgtt
gcaccccctgcacctgctgctgctgtaccttctgttgctgcgactgctgcttctcctcca
caggcaccctttggatttcctggagatggcatgcagcaaccagcatatacccagcaccaa
aacatggatcagtttcaacctcgaatgatggcaatacagcaggatccagtgcaccatcag
gttccacttcctcctaatggacagatgccaggatttggccttcttcctacacctccattt
cctcccatggctcagtccgtgattcctccaactccacccgtgcagcagcctttccaaact
tcctttcaggcacaaagtgaaccacttacacaaaaggcacatcaggaaatggaagtagaa
caaccttgtattcaagaggttaagcggcacatgtccgataacagaaagtcaagatctaga
tcagcatccaggtcaccaaaaaggagacgatctcgatctggttctagatctcgaaggtct
cgtcatcgacgttctcgatctcggtccagagatagacgccgacattctcctagatctcga
tcccaagaaagaagggatcgggaaaaagatagagagcgccgacaaaaaggccttcctcaa
atcaaaccagaaactgctagtgtttgtagtactacactctgggtgggacagctggacaaa
aggactactcagcaggatgttgccagtctcttagaagagtttggtccaattgaatcaatt
aatatgattcctcccagaggttgtgcctatattgttatggttcataggcaagatgctaac
cgtgccctgcagaaactgagccgaggaaactataaagtgaaccagaaatccataaagatt
gcgtgggccttaaacaaaggaataaaggcagattataagcagtattgggatgtagaactt
ggtgttacttatattccgtgggacaaagtcaagcctgaagaactggagagtttttgtgaa
ggaggaatgttggacagtgatacacttaatccagattggaagggaattcccaaaaagcat
gaaaatgaagttgctcaaaatggaggggcagaaacatcacacacagaaccagtatcaccc
atacctaagcctttacctgtgcctgtccctcctattcctgttcctgcacctataacagta
ccacctccacaggtcccaccacatcagccgggacctcctgtagttggtgctctccagcca
cccactttcacgcctcctttgggaattccccctccaggctttggtcctggtgttcctcct
cctccacctcctccaccatttctgcgcccaggattcaacccaatgcatttaccaccaggt
tttcttcctcctggacccccacctcctataactccaccagtatccattcctcctcctcac
actccaccaataaacatcccaaactctactatcgctggtataaatgaagacactacaaaa
gacttatctattggaaatcccattccaacagtggtgtctggggctagaggaaacgccgag
tctggtgacagtgtgaaaatgtatggttcttgtgccacctgctgcacccacgaatctgcc
cacccctcctgtaacccagcctgtttcacttcttgtgctactttgggtactcaaggagtt
gcacctggccctgtaattgggctccaagccccatccactggtcttcttggtgcccgacct
ggcctaatcccactccagcgcccgccaggaatgcctttgatgccacctcgtcccatgcct
ccgcatatgatgcatagaggtccgccaccaggccccgggggcttcgggatgcctccgcct
catggaatgaaaggtccctttcctccccacggcccctttgtccggcccggtggagtgcca
gggctcgggggcccaggtccaggcccagggggtcccgaggacagagacggaaggcagccg
ccgcagcagcagcagcagccgccaccagcaccgcaggcgcagcaacagccaccgacacag
ccaccgcagccgccgccgacgcagccacagccgtttagaaacgataacaggcagcagttc
acttcaggtagagaccaagaaaggtttggaagaagatcttttggaaatagggtggaaaat
gaccgggaacggtatgggaaccgtaatgatgatagagagaatagtaatcgtgaaaggaga
gagtggggaagaaggagccctgaccgggacaggcacagagacttggaagagaggaataga
cgctctagtgggcatcgagacagagagagagattctagagatagagagtctcgtagagag
aaggaggaaaaccgaggcaaggagaagcctgaggtgacagacagggcaggcggtaacaaa
accgttgaacctcccgttagccaagtgggaaatgtagacactgtttcagaacttgataag
ggggagtctgagtctgcagttgtaaaaccttctgaagagttacctgctgaggctacctca
tccgttgaacctgaaaaggattctggctcagcagccgaggctcctcgttag
DBGET
integrated database retrieval system
