Lipotes vexillifer (Yangtze River dolphin): 103078278
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Entry
103078278 CDS
T03090
Symbol
DDX60
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103078278 (DDX60)
Enzymes [BR:
lve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103078278 (DDX60)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
103078278 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103078278
NCBI-ProteinID:
XP_007457449
UniProt:
A0A340XE12
LinkDB
All DBs
Position
Unknown
AA seq
1673 aa
AA seq
DB search
MSQLILDQMAEADYDSLFNDFVESEFFLIDGDSLLMTYICEKSLQPEQGLHFFYLVECYL
VDLINKGGQFAVVFFKDAEHAYNDIPEFLPLRTALILHLEHNTDIDVRTDFSGCFSQEWK
TFLEDSYPYFLIVADESLSRLQVHLFNFLIIQSWAMKVNAVLFSGQASDVLRLYAYFMPS
KYKIQMFFQKNEKNIENAYKTLIKQLEECRVLALGHLFGNLKWKNMMEEACETISLLKQL
WPEGSDIRQVLCVTSCSLSLSLYHHFLENRNYPTLEGVTDWCRLHCLGVAFLLHLPLSQR
ACARFITSHWIKDIQTFLTMKKWCEYFILSNIDVFEFWNLNLTHLSDLSDELLLKNIAFY
YENESVQGLHLNLGNVIMKDYEHLWDTVSKLVTKFDVGKPFPLRTEQFPFLKKDPSPIKD
TSKEKMANLGFIPVSCQVVDKFAGDILKDLPFLTSDDPIVTSLVKQKEFDELVHWHSHRP
LSDDYDRTKGHFDEKSRDPHHLRSVQMYHRFQRFYGNSLESVSSKFVVPQAIKPRKNFCE
PKSKKIQETKAEKITRENKERLFAKEEEKEEKKWNVLSFSIEEEMKENLNSGIKNLEDFL
KSCKSSSVKFRVEMVGITACLRAWKEHCCGVGETTKDLSIAVQMMKRIYSVMEKYPGLLQ
EADRQLIARCLRYLGFEELASSLHPVQVTGNDVKEGKGKNKYSVGVGPARFQLQYMGHCL
VRDERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLREGD
DGVVVYVAPTKALVNQVAATVENRFNKNLPNGESLCGVFTRDYRHEALNSQVLITVPACF
EILLLAPHRQAWVKRIRYVIFDEVHCLGGEIGAEVWEHLLVMIRCPFLALSATISNPEHL
TEWLRSVKQYWKQTDSMMEKNSASSRNAGCRASSHRDCLLMKQSYKVRLVLYAERYNDLE
KHICSVNNHDISFDHFHPCAALTTDHIDKFGFPSDLTLSPREMIQLYDTMFEFWEGWPRA
QELCPEEFVHFKNKIVIRKMDARKYEESLKAELTGWVKSRHVKEGIITRARMVLRNLRPP
SVVSSENMAFMFPRLVEKLRQMEKLPALFFLFNLGAVERSARNVKRFLVIKQQSRMPLKA
DKEAYDMERKLRKVRKSLETQKKILLKVFEKSLEIPQDCTYADQKAIDAEVSPXDGTLKR
VFNRVKFSRKGAELKALAARGIGYHHSSLDAKEKQLVEILFRKGFIRVVTATGTLALGIN
MPCKSVVFAQNSVYLDALNYRQMSGRAGRRGQDLGGDVYFFGIPLPKIEKLIKSNVPELR
GQFPLSISLILRLMLLASKADDPEDAKAKVLSVLKHSLLSFKQPRALEMLKLYFLFSLQF
LVKEGYLDQEGNPTGFAGLVSHLHYHEPSNLVFVSFLVRGLFHNLCQPTGKGSKHFSQDV
MEKLVLVLANLFGRKYLPAKFQDATLKFYQSKVFLGDLPEDFKAALDEYNTNVTKDFASI
LLIVSKLADMKQEHQLPLSKIDFSGKECEDSQLVSHLMSCKEGRIAISPFACLSGNSDGN
LLHLETSDHVTLRTIGIDSTRAPVLWPQEFDLQGRRMQLNAYALDFYKHGSLTGLVQDNR
MNEGAAYELLRDFCLTIQSISVSLRELCENEEDNVVLAFEQLSETFYEKFKNI
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagttgattttggatcaaatggcagaagctgattatgacagtctgttcaatgat
tttgttgagtctgagttttttctgattgatggagactcactgctgatgacatacatctgt
gagaaatccttgcagcctgaacagggcctgcacttcttttacctggttgaatgctacctt
gtggatctaattaataaaggaggacagtttgccgtcgttttcttcaaggatgctgagcat
gcatacaacgacatccctgaatttcttcctctgagaacagcgttgattctccaccttgag
cataataccgacattgatgttcgaacggacttttctgggtgcttctcacaagagtggaaa
actttcttggaagacagttacccatattttctgatcgttgccgatgaaagcctgagccgt
ctacaagtacaccttttcaactttttaatcattcagtcctgggcaatgaaggttaatgcc
gtgctcttctcgggccaagcatccgatgtccttcgactttatgcgtactttatgccgagc
aagtacaaaatccagatgtttttccagaagaatgaaaagaacattgagaatgcttataaa
accctgattaagcaactggaggaatgtagagttttagcattaggacatctttttggaaat
ttaaaatggaaaaatatgatggaagaggcatgtgaaactatttctctgcttaagcaactg
tggccggaaggatctgacattcggcaagttctttgtgttacttcgtgctccttgtctttg
agtttataccatcactttttagaaaacaggaactaccccaccctggagggggtgacagat
tggtgtagactgcactgtctcggcgtggcatttctcctccacttacctctttcccaaaga
gcatgtgccagattcatcacttcccactggattaaggacattcagactttcttaacaatg
aaaaagtggtgtgaatacttcatcctaagtaatatagacgtttttgaattttggaatctg
aatttaactcacctttccgacttaagtgatgagcttttattgaagaatatagcattttac
tatgaaaatgaaagtgttcaagggctacatttgaatttgggaaatgtcattatgaaagat
tatgaacatctctgggatactgtatcaaagttggtcacaaagtttgatgttggaaagcca
tttcctctgagaacagaacaatttccttttcttaaaaaggatccgtcaccaatcaaagat
acctccaaggaaaagatggctaatttgggttttattccagtgtcatgtcaggtggttgat
aagtttgctggggacattttgaaagatttgcctttcctaacgagcgatgatcctattgta
acttcactggtcaagcagaaagaatttgatgagcttgtgcactggcattcccacagaccc
cttagtgatgattatgacaggacaaagggtcactttgatgaaaaatctagagatcctcat
catcttagatctgtgcaaatgtatcatcgttttcaacgattttatgggaattcattagaa
tcagtctcttcaaaatttgttgtacctcaagctatcaagccaaggaagaatttctgtgaa
cccaagagcaaaaagatacaggagaccaaggctgaaaaaattactagagagaataaggag
aggctatttgccaaggaagaagaaaaagaagagaaaaaatggaatgttctgtccttttct
attgaggaggaaatgaaagagaatttaaactccggaataaagaacctagaagattttttg
aaatcatgtaaaagtagctcagtgaaatttcgagttgaaatggtggggattactgcctgc
ttgagagcgtggaaagaacattgctgtggtgtaggtgaaaccacaaaagatttaagtata
gctgttcaaatgatgaaaaggatctactccgtgatggaaaaatacccaggacttttgcaa
gaggcagatcggcaactcatagccagatgccttaggtacttaggatttgaggagttggca
agttctttgcatccagtgcaggtcacaggaaatgacgtaaaggaggggaaggggaagaac
aaatactcggttggcgtcgggccagctcggtttcagctgcagtacatgggccactgtttg
gtacgagacgagaggaaagatccagaccccagagtccaggactttattcctgacacctgg
cagcgagagctcttggatgtcgtggacaagaatgagtctgcggtcatagtggcccccacg
tcctcagggaagacctacgcctcctactactgcatggagaaggtgctacgggagggcgac
gatggggtggtcgtgtacgtggcccccaccaaggcccttgtcaatcaggtggcagcaact
gttgagaatcgttttaacaaaaatctgccaaacggtgaatctctgtgcggtgtttttaca
cgggactatcgtcatgaggctctaaactctcaggtacttatcacagtgcctgcctgcttt
gaaattctgctgctagctccgcatcgccaggcgtgggtgaaaaggatcagatatgttata
tttgatgaggtccactgtcttggtggagaaattggagcagaggtctgggagcacctcctt
gtcatgatccgctgtcccttcctggccctttctgctaccatcagcaacccggagcatctc
accgagtggctacgatccgtaaaacagtactggaaacagacagacagtatgatggaaaaa
aattctgcttcttcaagaaatgccggctgccgcgccagttctcaccgagactgcttactg
atgaaacagtcgtataaagtgagacttgtgctctatgcagagagatacaatgatttagag
aagcacatatgttcagtaaacaatcatgacatctcctttgaccattttcacccgtgcgct
gcgctgaccacggaccatattgacaagtttggattcccttctgatcttaccctttcacct
cgagaaatgatccagctttatgataccatgtttgaattctgggaaggttggcccagggct
caggagttgtgtccagaggaattcgttcattttaagaataaaatagtcattcgaaagatg
gatgctagaaagtacgaagagagcttaaaggcagaactgacgggctgggtgaagagccgg
cacgtcaaggagggaattatcacacgtgccagaatggtcctgaggaatctccgtcctcct
tcggttgttagttcagaaaacatggcatttatgtttccacgtcttgttgaaaagctgagg
caaatggagaagttacctgcactgttttttttatttaatttaggggctgtagagagaagc
gctagaaatgtgaaaaggttcctagtgataaagcaacagagcagaatgcccctcaaggct
gataaggaggcctacgacatggagagaaaacttcgaaaagttagaaaatcccttgagaca
cagaagaaaattctcctcaaggtttttgagaagagcttggagatccctcaggactgcaca
tatgcagatcagaaggccatagatgctgaggtgagcccttaggatggaactttgaagagg
gtgtttaaccgagtgaaattctcaaggaaaggcgccgaactgaaggctttggcagcaagg
gggattggatatcatcacagctctttggacgccaaagaaaagcagttagttgagattctt
tttaggaaaggatttattagggtggtgaccgctacggggacactggctttaggaatcaac
atgccctgtaaatctgtggtttttgctcaaaactcggtctacctggatgctttaaactac
agacagatgtctggacgggccggacgacgaggccaagacctggggggagatgtgtatttc
tttggtatcccactccctaaaatcgaaaagctcatcaaatccaatgtccctgaactgaga
gggcagttccctctcagcatatccctgatcctgagactcatgcttctggcttccaaggca
gatgaccctgaggatgctaaggcaaaggtgctgtcggtgctcaagcactcactgctctcc
ttcaagcagccccgggcactggagatgttgaaactgtactttctgttctccctgcagttc
ctggtgaaggagggctatttagatcaagaaggtaatcctacaggctttgctggacttgtg
tcacatttgcattatcacgagccttctaatcttgttttcgtcagttttcttgtaagaggc
cttttccataatctctgtcagccaaccgggaaaggctcaaaacatttttctcaagatgtt
atggaaaagctagtgttagtattggcaaatctgtttggcagaaaatatcttccagcaaag
ttccaagatgctacgctcaagttttatcaatccaaggtgtttctgggggatctccctgag
gacttcaaggctgctctagatgagtataacacaaacgtgacaaaggactttgcctctatc
ctactgattgtttccaaactggctgatatgaaacaagaacatcagctcccattgtcaaaa
atagatttctcaggtaaagagtgtgaagactcacaacttgtgtctcacttgatgagctgc
aaggaaggaagaatagccatttctccgtttgcctgtctctctgggaactctgatggcaat
ttgcttcatctagagacttcagaccatgtcactctgcgcaccattggcattgatagcact
cgggctcctgtgctgtggccacaggaatttgatctccaaggaagaagaatgcagctcaat
gcttatgcgctcgatttctataaacacggttccttgacaggattggtccaggacaacagg
atgaatgaaggagctgcttatgagttgttgagagatttttgcctcaccattcaatctatc
agtgtttctttgcgtgaactatgtgaaaatgaagaggacaacgtggtcttagcatttgaa
caactgagtgaaaccttttatgaaaaatttaagaacatttga
DBGET
integrated database retrieval system
