Lipotes vexillifer (Yangtze River dolphin): 103078299
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Entry
103078299 CDS
T03090
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04151
PI3K-Akt signaling pathway
lve04510
Focal adhesion
lve04512
ECM-receptor interaction
lve04974
Protein digestion and absorption
lve05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
103078299 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103078299 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103078299 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103078299 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
103078299 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lve00536
]
103078299 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103078299 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
103078299
NCBI-ProteinID:
XP_007463895
UniProt:
A0A340XXG8
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLTTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQLAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPMG
PRGPTGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGTPGSPGPAGASGNPGSDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPTGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
RKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGTRGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG
LPGTPGTDGPKGAAGPGGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPAG
PVGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPAGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPAWKRGDYWIDPNQGCTLDAMKVFCNMDTG
ETCVYPSPASVPKKNWWNSDSKDKKHVWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLRKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGNTKIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgccgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggatgggcagagg
tataacgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcaccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga
cctcctgggcctcagggacctgccggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggccctcctggcccccctgggccccctggtcttggtggaaactttgct
gctcagttggctggaggatttgatgagaaggctggtggcgcccagatgggagtaatgcag
ggaccaatgggccccatgggacctcggggacctccaggtcctgcaggtgctcccggacct
caaggatttcaaggcaaccctggtgaacctggggaacccggcgttgctggtcccatgggt
ccccgcggtcctactggcccccctggaaaacctggtgacgatggtgaagctggaaaggct
ggaaaacctggcgagagaggccttcctggtcctcagggtgctcgcggcttcccagggacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagctggtgctccaggtgtgaagggtgagagtggttccccaggagagaacggttctcca
ggcccaatgggtccccgtggcctgcccggtgagagaggacggactggccctgctggcgct
gcgggtgctcggggcaacgatggccaacccggccccgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagccggccccacc
ggtgctcgagggcctgaaggtgcccaaggttctcgcggtgaacctggtactcctgggtcc
cccgggccggctggtgcctctggtaaccctggatctgatggaattcctggagctaaagga
tctgctggtgcccctggcattgctggtgctcccggcttccctgggccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctactggtccccaagga
gcccccggtcctgctggtgaagaaggcaaaagaggggcccgtggagagcctggtggtgct
gggcccgctgggccccctggagaaagaggtgctcctggcaaccgtggcttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgagggcccagcggtcttgctggt
cgcaagggagccaatggtgaccctggccgtcctggagagcccggcctccctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
gctggtgaagatggtcgccctggacccccaggtcctcaggggactcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa
ggactgcctggtgctcccggtctgagaggtctccctggcaaagatggtgagacaggagct
gcaggcccccctggacctgctggacctgccggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggcccgcccggtcccccaggtgaaggtggaaaacca
ggtgaccagggcgttcctggtgaagctggagctcctggcctcgtgggtcccaggggtgaa
cgaggtttcccaggggaacgtggctctcccgggtcccagggcctccaggggccccgcggc
ctccctggcactcctggcactgatggtcccaaaggcgcagctggcccaggtggcccccct
ggggctcagggccctccaggcctgcaggggatgcccggtgagagaggagcagctggcatc
gctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagcccccggg
aaggacggtggacggggtctgactggccccattggcccccctggcccggctggtgccaac
ggtgagaagggagaagttggacctcctggtccctcaggaactgctggtgctcgcggcgcc
ccgggtgaacgcggagagactggaccccccgggcccgctggatttgccggtcctcctggt
gctgacggccagcccggtgccaaaggcgagcaaggagaggctggccagaaaggtgacgcc
ggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggcgctcaaggccccccgggggccaccggattccccgga
gctgcaggccgcgtcggacccccaggttccaatggcaaccctggaccccccggcccccct
ggtccttctggaaaagatggtcccaaaggtgctcgaggagacagcggcccccctggccga
gctggtgaccctggcctccaaggtccttccggaccccctggcgagaagggagagcctgga
gatgacggtccttctggccccgacggtcctccaggtccccagggtctggctggtcagagg
ggcatcgttggtctgccggggcagcgtggtgagcgaggattccccggcctgcccggccca
tcgggtgagcctggcaagcagggagctcctggagcatctggagaccgaggtccccctggc
cccgtgggtcctcctggcctgactggtcctgcgggtgaacctggacgcgagggaagccct
ggtgctgacggcccccctggcagagacggtgcagctggagtcaagggtgatcgtggtgag
accggtcccttgggtgcccccggagccccggggccccctggctctcctggccccgccggc
ccggtcggcaagcagggagaccgaggagaagctggtgcacaaggccccatgggaccctca
ggaccagctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa
acgggagaggctggcgagcggggactgaagggacaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtcccgccggagaccaaggggcttctggtcccgccggtccttct
ggccccagaggtcctcctggccccgtcggtccctctggcaaagatggcgctaatggaatc
cccggccccattggacctcctggaccccgtggacgttcaggcgaaactggccctgccggt
cctcctggaaatcctggcccccctggccctccaggtccccctggccctggcattgacatg
tccgcctttgctggcctaggccagagagagaagggccccgaccccctgcagtacatgcgg
gccgacgaggcagccggcaacctgagacagcacgacgccgaggtggatgccacactcaag
tccctcaacaaccagatcgagagcatccgcagccccgagggatcccgcaagaaccccgct
cgcacctgccgggacctgaaactctgccaccctgcgtggaagcgcggagattactggatc
gacccgaaccagggctgcaccctggacgccatgaaggttttctgcaacatggacactggc
gagacctgcgtctaccccagcccagccagtgttcccaagaagaactggtggaacagcgac
agcaaggacaagaaacacgtctggtttggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgacgttcctgcgcctg
ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagccgctggcaacctcaggaaggccctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacgtatactgttctgaaggatggctgcacgaaa
cacaccggtaagtggggcaacactaagattgagtaccggtcgcagaagacctcacgcctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
