Lipotes vexillifer (Yangtze River dolphin): 103078804
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Entry
103078804 CDS
T03090
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04151
PI3K-Akt signaling pathway
lve04510
Focal adhesion
lve04512
ECM-receptor interaction
lve04820
Cytoskeleton in muscle cells
lve04926
Relaxin signaling pathway
lve04933
AGE-RAGE signaling pathway in diabetic complications
lve04974
Protein digestion and absorption
lve05146
Amoebiasis
lve05165
Human papillomavirus infection
lve05200
Pathways in cancer
lve05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
103078804 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103078804 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103078804 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103078804 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
103078804 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
103078804 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
103078804 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
103078804 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
103078804 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
103078804 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
103078804 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lve04147
]
103078804 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
lve00536
]
103078804 (COL4A4)
Exosome [BR:
lve04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103078804 (COL4A4)
Glycosaminoglycan binding proteins [BR:
lve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103078804 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103078804
NCBI-ProteinID:
XP_007467991
UniProt:
A0A340Y2S1
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MALVRRSFRWIKPLATDSWLLVLILFSVQHVYGGGKKFIGPCWGRDCSLCQCFPEKGSRG
QPGPPGPQGPIGPLGPPGPIGIPGEKGMRGDSGLPGAAGDKGDKGLTGVPGFPGLDGIPG
HPGPPGSRGKSGVDGYNGSRGAPGFPGERGAPGPQGSPGLLGKKGEKGNSVFIVGVIKGI
QGDRGDPGPPGLPGSRGVRGPAGPVGYPGESGLAGPPGPPGSPGLKGNPGVGVKGQMGDP
GEVGQQGSPGPTLLVQPPDSGLYKGEKGIKGTPGIIGPPGPPGPKGEPGIGTKGEKGIPG
FPGPRGDPGFYGSPGFPGLKGEPGVFGDPGPFGFLGPKGDPGDRGHPGPPGVLATPALPL
KGPPGDPGHPGRYGEMGAVGPPGPPGPPGRPGEVCAGMMGPPGPRGFSGHPGFPGAAGIP
GRADSAPGKPGNQGPPGLPGVPGLPGPPGSDVVYCSAGPPGPQGIKGKVGPPGRRGSKGE
KGNTGLCACQPGPSGPPGPPGLPGRQGSKGDLGLPGRLGEKGYPGLPGARGSPGPPGKPG
TSGPPGSKGEKGDLVVSRVKGHKGERGPDGPPGFPGQQGQHGQDGYAGEKGDPGPLGDHE
DAAPGDKGPPGLPGPPGRAGPRGPPGLGFPGPPGERGQPGAPGCPGKRGPDGWKGQKGDT
IPCNVTYPGRPGPPGFDGPPGPKGFPGRRGAPGLRCLDGEKGQRGKPGISEIPGPPGFHG
DMGDPGFGGEKGSSPVGPPGSPGSPGVNGQKGPPGDSAIGYPGPPGKRGLLGIPGSKGLR
GDPGRPGAAGPAGMPGFPGLKGPKGREGSAGFPGIPGPPGHSCERGAPGRPGPPGLPGAP
GSPGAPGWKGQQGDMGPPGPAGMKGLPGVPGRPGADGPPGPPGVPGPTGDDALPGLPGPK
GPQGLPGFLGFPGERGKPGPDGHPGRKGEHGEKGWPGSLGDRGVKGDKGARGPPGYEGEV
DIISKKGETGEPGPPGDGGFPGEEGDKGHPGIQGKKGEPGSCGPPGFHRGEPGRKGQPGL
PGPPGPPGSPGLRGLIGFPGFPGDQGEPGSPGPPGLSGIDGTRGPKGYKGEPASQFGLPG
PKGGPGSPGYPGHLGAPGEQGLPGVQGPGGPPGRPGPPGSSGPAGCPGNPGLPGLQGHPG
EMGDPGPRGLVGDPGAPGLPGIKGPSGSPGLNGLHGLKGQKGSKGTSGSHKTGPPGPVGM
PGPKGQTGDPGSPGISPPGLFGDKGPPGPPGRPGPPGPAGAPGRALKGDILDPGLPGDQG
PPGPDGPRGIPGPPGPPGRVELLKGEPGDCGLPGPPGPPGPPGPPGRKGFPGCDGKDGQK
GPMGFPGLQGPPGAPGPPGEKGLPGPPGRQGPLGPPGSRGEPGPPADVDACPRIPGLPGV
PGPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPGHKGDMGEAGCPGVP
GPPGPVGDPGPEGFGPVYPSGFLLVLHSQTDGEPTCPAGMPRLWTGYSLLYLEGQERAHN
QDLGLAGSCLPMFSTLPFAHCNIHQVCQYALRNDRSYWLASTAPLPMTPLSEEEIRPYIS
RCAVCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLE
DFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPDTLKESQAQRQKISRCQ
VCVKHS
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggcattggtaaggcgctctttcaggtggatcaagcccttggccacagattcctggttg
cttgtacttattctcttttctgtacaacatgtgtacgggggtggaaagaagtttattggt
ccctgctggggaagagattgctctctttgccagtgctttcctgaaaaggggtctcggggt
caaccaggaccaccagggccacagggtcctattggacccctggggccaccaggacccatt
ggaattccaggagagaaagggatgagaggtgacagtggccttcctggagcagcaggtgac
aagggtgataagggtctaaccggtgttcctggattcccaggtttggatgggatacctggg
cacccagggcctcctggatccagaggcaaatctggcgtagatggctacaacggctcaaga
ggtgctccaggctttccaggagaaagaggagctcctggcccacaaggctccccaggcctt
cttgggaaaaaaggagaaaaaggaaattcagtgttcattgtaggtgtcattaaaggtatt
cagggtgacagaggggacccaggacctcccggcttaccaggctcaaggggagtgagagga
ccagcaggcccagtgggatatccaggagagtcagggttggcaggacctccaggccctcct
gggagtccaggtttgaagggtaatcctggcgtgggagtaaaggggcaaatgggagacccg
ggtgaggttggccaacagggttctccaggacccacccttctggtgcagccacctgattct
ggtctctataaaggagaaaagggtattaaaggaacgcctggaatcattggacctcccgga
ccaccaggccccaagggggaacccggtattgggacaaaaggagagaaaggtattcctggg
tttccaggacctcggggggaccctggcttctatggatctccaggttttccaggattaaag
ggggaaccaggagtgtttggagatcctggcccgtttggatttcttggtccaaagggagat
cctggagaccgtgggcacccaggaccaccaggggttttggcaactccagctcttccactc
aaagggcctccaggggatccagggcaccctggccgctatggagaaatgggggctgttgga
ccacctggtccccctggtccccctggtagaccaggggaagtctgtgcaggcatgatggga
ccccctgggccacgagggttttctggtcatccaggatttccaggggcagctggtattcct
gggagagctgattctgctccaggaaaaccaggcaaccagggaccacctgggttgcctgga
gtgccagggttgccgggacctccaggatcagatgttgtatattgtagtgctgggcctcct
ggaccacaaggaataaaaggcaaagtgggtcctccaggaagaagaggctcaaaaggagaa
aaaggcaacacagggctctgtgcctgccagcctggtccctcaggcccacccggccctcca
ggacttcctgggaggcaagggagtaaaggagacttgggactccctgggcgacttggagaa
aaaggttacccaggacttcctggtgccagaggatctccagggccaccaggaaaacctggt
acctcaggaccacctggcagcaaaggagaaaaaggtgacctggttgtatcaagagtgaaa
gggcacaaaggagaaagaggtcctgatgggcccccaggatttccagggcagcagggacaa
cacggtcaagatggatatgctggagaaaaaggggacccaggaccgctgggagatcatgaa
gatgcagccccaggtgacaaagggcctcctggactaccaggccccccgggcagagcagga
cctagggggcctccgggactgggatttcctggtccaccaggagagagagggcaaccagga
gctccaggctgcccaggcaagaggggccctgatggctggaagggtcagaaaggtgataca
attccttgtaacgtaacctaccctgggaggccaggcccgccaggttttgatggacctcca
ggtccaaagggatttccaggtcgtcggggagctcctgggttgaggtgtctggatggggaa
aagggtcaacgtggcaaaccaggaatctcagaaatacctggtccacctggttttcatggt
gatatgggagatccaggttttggaggtgaaaaggggtcctcccctgtcgggcccccaggc
tctccaggttcacctggagtgaatggtcagaaaggacctccaggagactctgctattggc
tacccaggacccccaggaaagaggggtcttttaggaataccagggtcaaaaggactcaga
ggtgatcccggacgaccgggggctgcagggccagctggcatgcccggattcccgggtctc
aaaggtcccaaagggagagagggaagtgctgggtttccagggatcccaggtccacccggc
cattcctgtgaaagaggcgctccagggagaccagggccaccagggctccctggagctcca
ggaagtccaggtgccccaggttggaaaggacaacaaggggacatggggcctcctggaccc
gctggaatgaagggcctccccggagtcccaggacggccaggggcagatggacccccaggg
cccccgggagtcccaggccccactggggatgatgcgctacctggtcttccaggcccaaag
ggaccccaggggctgcccggcttcctgggttttccgggagagagaggaaaacctggccca
gatggacaccctggcagaaagggagaacacggagaaaagggttggcccggctccctggga
gaccgaggagtgaaaggtgacaaaggagcaagaggacccccaggatatgaaggagaagtg
gatattatttctaaaaagggggaaaccggggaacctggacctcctggagatggtggattc
ccaggagaagaaggtgataaaggccatcctgggatacaagggaagaaaggagagccagga
agctgtggaccacctggatttcacagaggggagcccgggaggaaagggcagccaggcctt
cctggacccccaggccctccaggctcacctgggctgagagggctcattggctttccggga
tttccaggtgaccagggtgagccaggttctccagggccccctggactttcaggaattgat
ggtacaagaggacctaaaggatacaaaggggaacctgcaagtcagtttggcctacctggt
ccaaagggtgggccaggtagccctggatatccaggacatttgggagcacctggagagcag
ggcttgcccggtgttcaaggacctggaggaccacccggaaggccaggaccgcctggctcc
tctggaccagcggggtgtccaggtaatccagggctgcctgggctgcagggacatccagga
gaaatgggggatcctgggccaagaggcctcgtgggggatccaggggcaccaggtcttccg
ggaataaaaggtccctccgggtcgcctggcctgaatggcttgcacggtttaaagggtcag
aaaggcagcaaaggcacttcaggttcccataaaacgggcccacctggtccagtgggaatg
cccgggccaaaaggccagacaggagaccccgggagcccaggaatttctcctccaggactt
ttcggagacaaaggtcccccaggtcccccagggagacctggaccgcctggtcctgcaggt
gccccaggaagagctcttaagggtgacattctggacccgggtctgcctggagatcaggga
cctcctggccccgatggtccaagaggaatacctgggcctccagggccccctgggagggtt
gaacttctgaaaggtgaaccaggtgactgtggtctgccggggcctccaggtcccccaggc
ccaccaggccctccaggacgcaaaggcttcccaggctgtgatggaaaagatggccagaaa
ggaccaatgggattcccagggctgcaggggccacctggagctcctgggccacctggagag
aagggtttacctggacctccaggcagacaggggcccttgggtcctccaggttccagaggt
gaacctgggccccctgcagacgtggatgcttgcccccgaatcccggggcttcctggggta
ccaggcccaagaggaccagaaggaaccatggggctccccggaatgagaggccccccaggg
ccagggtgcaaaggagagcccgggctggatggcaggagaggcgaggatggccttccaggg
tcccctgggcctccgggacacaaaggtgacatgggagaagcgggctgcccaggagtacca
ggccctcctgggcccgtgggggatcctgggcccgaagggttcggccctgtataccccagt
ggcttcctcctggttctccacagtcagacagatggagaacccacctgccccgcgggcatg
cccaggctctggaccgggtatagtctgttatacctggaaggacaggagagagctcacaat
caagaccttggtctggcgggctcctgcctccccatgttcagcacgctgcccttcgcccac
tgcaacatccaccaagtgtgccagtacgccctgaggaacgacaggtcctattggctggcg
agcaccgcgccgttgcctatgacgccgctctcggaagaggagatccgcccgtacatcagc
cgctgcgccgtgtgcgaggcccccgcgcaagccgtggccgtgcacagtcaggaccagtcc
atcccgccgtgtccgcgggcctggaggagcctctggattgggtactctttcctgatgcac
acaggcgctggggaccaaggaggcggccaggccctcatgtcacccggcagctgcctggaa
gatttcagagctgcaccattccttgaatgccaaggacggcagggaacttgccactttttt
gcaaatgagtatagcttctggctgacaactgtgagacctgacttgcagttttcctcagca
ccctcaccggacaccttgaaagaaagccaagcccagcgccagaaaatcagcaggtgccag
gtctgtgtgaagcatagctag
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integrated database retrieval system
