Lipotes vexillifer (Yangtze River dolphin): 103078807
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Entry
103078807 CDS
T03090
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103078807 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103078807 (CNOT1)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103078807 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103078807 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103078807
NCBI-ProteinID:
XP_007468383
UniProt:
A0A340Y558
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtca
ctgattacgaagccaaattttatctccacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccatttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttat
attgacgcagacgtcagtggaaatcaagaaggtggcttccaggatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacgctgcgcagagattttccccaggagcgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacagaatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgacttcatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagacggaattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccaagtttgaatttcaaggaagtaacttatgag
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtagtgtatggc
attcaaaggggtctgggtatggaagtgttccctgtagacctcatatacagaccttggaaa
catgcagaaggccagctctcattcattcagcattcccttataaatccagagatcttctgt
tttgccgactacccatgtcatactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctc
gcagaggtagggcaatatgagcaagtcaaacaactcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaatcaacacctcttggcacaccttgcgccat
gaactcatctccactctgatgccaattttccttggaaaccaccctaactcagctataatt
ttgcactatgcatggcatgggcagggacagtctccctcaatccgccaacttatcatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcttgtatgactttttta
aagagacggtgtccttctattttgggtggacttgcaccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaactgcagtaatgtt
atgaacaaggccagacagccaccacctggagttatgccaaaaggacgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtaccccacagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgatccttttgtgcagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaactatgtctgttgatgaggtattagaaatgctacagaggtttaaagattctacc
ataaagagagaacgagaagtatttaactgtatgctaagaaacttgttcgaagaatatcgg
ttcttcccccagtaccctgataaagagttacatataacagcctgcctgtttggtggtata
atcgaaaaaggactggtcacttacatggcactaggtttggccctacgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatgcaatttccacatcatttacaggagtatatcgagtatggacagcaatctagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaagcc
caggcccaggcccaggttccagcgaaagctccccttgctggtcaggttagcactatggta
accacctcaacaaccaccactgttgcaaaaacagttacggtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacattacttgtg
gccacagatcaaacagagagaatcgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaacctctcccagtcaaatatgacacaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctggttatgaagagagttagt
attgagccaaactttcacagcctatattcaaacttccttgacacactgaagaatcctgaa
tttaataagatggttctgaatgagacctatagaaacatcaaagtgctcctgacctctgat
aaagctgcagccaatttctctgatcgttctttgctgaagaatttgggacattggctagga
atgatcacactagctaaaaataaacccatcttacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagagttgctttatgtagtcccctttgttgcc
aaagtcttagaatctagcattcgtagtgtggtttttaggccacccaacccctggacaatg
gcaattatgaatgtattagcagagctacatcaggaacatgacttaaagttaaacttgaag
tttgagattgaggtcctctgcaagaaccttgcattagacatcaatgagctgaaacctgga
aacctcctaaaggataaagatcgcctaaagaacttagatgagcaactctctgctccaaag
aaagatgtcaagcagccagaagagctccctccaatcacaaccacaacaacttctacaaca
ccagctaccagtaccacctgtacagccacggttccaccacagccacagtacagttaccat
gacatcaatgtctattcccttgcgggcctggcaccacacattactctaaacccaacaatt
cccttgtttcaggcccatccacagttgaagcagtgtgtgcgtcaagcaattgaacgggct
gtccaggagctggtccatcctgtagtggatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgaggaacttgacagctggaatggctatgattacttgcagggaacct
ttactcatgagcatatccaccaacctgaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgcaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgcaatgtgcct
ggcttcttgcctacaaatgatttaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacggatgacgtagctcagatttatgataagtgcattacagaactggag
cagcaccttcacgccatcccaccaactttggccatgaaccctcaagctcaggctcttaga
agtcttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttgga
ttgctccagaaggctgtagagggcttactagatgccaccagtggtgctgatgctgacctc
ctgcttcgatacagagagtgccacctcttggtcttaaaagctcttcaagatggccgagcg
tatgggtctccatggtgtaacaagcagatcacaaggtgcctaattgagtgtcgggatgaa
tataaatataatgtggaggcagtggagttgctaattcgcaatcatttggtcaatatgcaa
cagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtaaaaatcctgctggtggatgaaaggagtgttgcccatgtaact
gaggcagatctgttccacaccattgaaaccctcatgaggattaatgctcactccagaggc
aatgctcctgaaggattgccccagctgatggaagtagtgagatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gagtatgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggtcgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcaccagcaaggaatcctgaagactgatgacctcataacaaggttctttcgt
ctgtgtactgaaatgtgtgttgaaatcagttaccgtgctcaggcagagcagcagcacaat
cctgctgctaatcccaccatgatccgagccaagtgctatcacaacctggatgcctttgtc
cgactcattgcactgctagtaaagcactcaggggaggccaccaacactgtcacaaagatt
aatctgctgaataaggtccttggtatagtagtgggagttctcctgcaggatcatgatgtt
cggcaaagtgaatttcagcagcttccctaccatcgaatttttatcatgctgctcttggaa
ctcaatgcacctgagcatgtattggaaaccattaatttccagacacttacagctttctgc
aacacattccacatcttgaggcctaccaaagctcctggctttgtgtatgcttggcttgaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacgccacagcagaaggga
tggcctatgtatgcacagctactgattgatttgttcaaatatttagcacctttccttaga
aatgtggaactcaccaaacctatgcaaatcctctacaagggcactttaagagtgctgctg
gttcttttgcatgatttccctgagttcctttgtgattaccattatggattctgtgacgtg
atcccacctaattgtatccagctaagaaatctgatcctgagtgcctttccaagaaacatg
aggctcccagacccattcactcctaatctgaaggtggatatgttgagtgaaattaacatt
gcaccccggattctcaccaattttactggggtgatgccaccccagttcaaaaaggatttg
gattcctaccttaaaactcgatcacctgtcacttttctgtctgatctgcggagcaaccta
caggtatccaatgagcctggtaatcgctacaacctccagctcattaatgcactggtgctc
tatgtagggactcaggcaattgcacacatccacaacaagggcagcacaccttcaatgagc
acgatcacccactctgctcacatggacatcttccagaacctggctgtggacttggacact
gaaggtcggtatctcttcttgaatgcaattgcaaatcagctgcggtacccaaatagccac
actcactacttcagctgcaccatgctctacctttttgcagaggccaacactgaagctatc
caagaacagatcacaagggttcttttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattaccttcattgagctgattaaaaatccagcgtttaagttctggaaccac
gagtttgtacactgtgccccagaaattgaaaagttattccagtctgtcgcacagtgctgc
atgggacaaaagcaggctcagcaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
